RNA–Protein interactions for RNA: ENST00000530277.5

SCN3B-206, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 3,984 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-206ENST00000530277 NISCHQ9Y2I1 1504 aa22.67■■□□□ 1.22
SCN3B-206ENST00000530277 DCAF8L2P0C7V8 631 aa22.07■■□□□ 1.12
SCN3B-206ENST00000530277 SHROOM4Q9ULL8 1493 aa21.58■■□□□ 1.05
SCN3B-206ENST00000530277 SUPT5HO00267 1087 aaKnown RBP21.55■■□□□ 1.04
SCN3B-206ENST00000530277 EHMT2Q96KQ7 1210 aa20.76■□□□□ 0.91
SCN3B-206ENST00000530277 FAM9AQ8IZU1 332 aaPredicted RBP20.27■□□□□ 0.83
SCN3B-206ENST00000530277 PCGF6Q9BYE7 350 aa20.24■□□□□ 0.83
SCN3B-206ENST00000530277 TTBK1Q5TCY1 1321 aaPredicted RBP19.99■□□□□ 0.79
SCN3B-206ENST00000530277 LOC105371045A0A1W2PR82 267 aa19.83■□□□□ 0.76
SCN3B-206ENST00000530277 PPARGC1BQ86YN6 1023 aaKnown RBP19.76■□□□□ 0.75
SCN3B-206ENST00000530277 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
SCN3B-206ENST00000530277 TRIM41Q8WV44 630 aa19.68■□□□□ 0.74
SCN3B-206ENST00000530277 RANGAP1P46060 587 aaPredicted RBP19.58■□□□□ 0.73
SCN3B-206ENST00000530277 HRCP23327 699 aa19.37■□□□□ 0.69
SCN3B-206ENST00000530277 CCER1Q8TC90 406 aaPredicted RBP19.22■□□□□ 0.67
SCN3B-206ENST00000530277 UBTFP17480 764 aaKnown RBP19.19■□□□□ 0.66
SCN3B-206ENST00000530277 TRIM26Q12899 539 aaPredicted RBP19.15■□□□□ 0.66
SCN3B-206ENST00000530277 APLP2Q06481 763 aa19.1■□□□□ 0.65
SCN3B-206ENST00000530277 ABCC9O60706 1549 aa19.07■□□□□ 0.64
SCN3B-206ENST00000530277 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.96■□□□□ 0.63
SCN3B-206ENST00000530277 PABPN1Q86U42 306 aaKnown RBP eCLIP18.94■□□□□ 0.62
SCN3B-206ENST00000530277 YTHDC1Q96MU7 727 aaKnown RBP18.92■□□□□ 0.62
SCN3B-206ENST00000530277 MYO15BQ96JP2 1530 aa18.92■□□□□ 0.62
SCN3B-206ENST00000530277 ZCCHC6Q5VYS8 1495 aaKnown RBP18.9■□□□□ 0.62
SCN3B-206ENST00000530277 ATP1B4Q9UN42 357 aaPredicted RBP18.88■□□□□ 0.61
SCN3B-206ENST00000530277 ZEB1P37275 1124 aaPredicted RBP18.87■□□□□ 0.61
SCN3B-206ENST00000530277 HNRNPUL2Q1KMD3 747 aaKnown RBP18.81■□□□□ 0.6
SCN3B-206ENST00000530277 ITGAEP38570 1179 aa18.73■□□□□ 0.59
SCN3B-206ENST00000530277 SCRIBQ14160 1630 aa18.63■□□□□ 0.57
SCN3B-206ENST00000530277 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
SCN3B-206ENST00000530277 PELP1Q8IZL8 1130 aaKnown RBP18.5■□□□□ 0.55
SCN3B-206ENST00000530277 DIEXFQ68CQ4 756 aaKnown RBP18.42■□□□□ 0.54
SCN3B-206ENST00000530277 CCDC180Q9P1Z9 1646 aa18.34■□□□□ 0.53
SCN3B-206ENST00000530277 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
SCN3B-206ENST00000530277 CSRNP3Q8WYN3 585 aa18.27■□□□□ 0.52
SCN3B-206ENST00000530277 CNGB1Q14028 1251 aaPredicted RBP18.25■□□□□ 0.51
SCN3B-206ENST00000530277 DCAF1Q9Y4B6 1507 aa18.25■□□□□ 0.51
SCN3B-206ENST00000530277 GTF3C3Q9Y5Q9 886 aa18.19■□□□□ 0.5
SCN3B-206ENST00000530277 P3H3Q8IVL6 736 aa18.17■□□□□ 0.5
SCN3B-206ENST00000530277 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
SCN3B-206ENST00000530277 FAM50AQ14320 339 aaKnown RBP18.12■□□□□ 0.49
SCN3B-206ENST00000530277 NEUROD1Q13562 356 aa18.1■□□□□ 0.49
SCN3B-206ENST00000530277 ARID3CA6NKF2 412 aa18.03■□□□□ 0.48
SCN3B-206ENST00000530277 SCAF1Q9H7N4 1312 aaKnown RBP18.03■□□□□ 0.48
SCN3B-206ENST00000530277 POLR3GLQ9BT43 218 aa18.02■□□□□ 0.48
SCN3B-206ENST00000530277 ZNF316A6NFI3 1004 aaPredicted RBP17.99■□□□□ 0.47
SCN3B-206ENST00000530277 RB1CC1Q8TDY2 1594 aa17.96■□□□□ 0.47
SCN3B-206ENST00000530277 ACIN1Q9UKV3 1341 aaKnown RBP17.95■□□□□ 0.46
SCN3B-206ENST00000530277 BCANQ96GW7 911 aa17.95■□□□□ 0.46
SCN3B-206ENST00000530277 NEFLP07196 543 aa17.86■□□□□ 0.45
SCN3B-206ENST00000530277 MROH2BQ7Z745 1585 aa17.85■□□□□ 0.45
SCN3B-206ENST00000530277 SOGA1O94964 1423 aa17.82■□□□□ 0.44
SCN3B-206ENST00000530277 CEP162Q5TB80 1403 aa17.81■□□□□ 0.44
SCN3B-206ENST00000530277 HIRIP3Q9BW71 556 aaPredicted RBP17.81■□□□□ 0.44
SCN3B-206ENST00000530277 MIER1Q8N108 512 aa17.8■□□□□ 0.44
SCN3B-206ENST00000530277 MYT1Q01538 1121 aa17.79■□□□□ 0.44
SCN3B-206ENST00000530277 TRIM52Q96A61 297 aa17.77■□□□□ 0.44
SCN3B-206ENST00000530277 ABCC8Q09428 1581 aa17.75■□□□□ 0.43
SCN3B-206ENST00000530277 CLIP1P30622 1438 aa17.7■□□□□ 0.42
SCN3B-206ENST00000530277 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
SCN3B-206ENST00000530277 FBLN2P98095 1184 aa17.68■□□□□ 0.42
SCN3B-206ENST00000530277 ZNF326Q5BKZ1 582 aaKnown RBP17.68■□□□□ 0.42
SCN3B-206ENST00000530277 ERICH6Q7L0X2 663 aa17.66■□□□□ 0.42
SCN3B-206ENST00000530277 DDX10Q13206 875 aaKnown RBP17.65■□□□□ 0.42
SCN3B-206ENST00000530277 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.41
SCN3B-206ENST00000530277 WIZO95785 1651 aa17.64■□□□□ 0.41
SCN3B-206ENST00000530277 NACADO15069 1562 aa17.61■□□□□ 0.41
SCN3B-206ENST00000530277 CHIC2Q9UKJ5 165 aa17.59■□□□□ 0.41
SCN3B-206ENST00000530277 MYT1LQ9UL68 1186 aa17.55■□□□□ 0.4
SCN3B-206ENST00000530277 RUSC2Q8N2Y8 1516 aa17.54■□□□□ 0.4
SCN3B-206ENST00000530277 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
SCN3B-206ENST00000530277 BAZ1AQ9NRL2 1556 aaPredicted RBP17.52■□□□□ 0.39
SCN3B-206ENST00000530277 GOLGA3Q08378 1498 aa17.51■□□□□ 0.39
SCN3B-206ENST00000530277 SENP3-EIF4A1A0A087X0R7 540 aa17.5■□□□□ 0.39
SCN3B-206ENST00000530277 ZNF777Q9ULD5 760 aaPredicted RBP17.5■□□□□ 0.39
SCN3B-206ENST00000530277 ANP32CO43423 234 aa17.49■□□□□ 0.39
SCN3B-206ENST00000530277 KANK4Q5T7N3 995 aaPredicted RBP17.48■□□□□ 0.39
SCN3B-206ENST00000530277 SIN3AQ96ST3 1273 aa17.46■□□□□ 0.39
SCN3B-206ENST00000530277 BAZ1BQ9UIG0 1483 aaKnown RBP17.45■□□□□ 0.38
SCN3B-206ENST00000530277 FKBP8Q14318 412 aa17.42■□□□□ 0.38
SCN3B-206ENST00000530277 IRX6P78412 446 aaPredicted RBP17.38■□□□□ 0.37
SCN3B-206ENST00000530277 RRP7BPQ9NSQ0 103 aa17.38■□□□□ 0.37
SCN3B-206ENST00000530277 EEA1Q15075 1411 aa17.34■□□□□ 0.37
SCN3B-206ENST00000530277 CEP164Q9UPV0 1460 aa17.34■□□□□ 0.37
SCN3B-206ENST00000530277 TONSLQ96HA7 1378 aa17.32■□□□□ 0.36
SCN3B-206ENST00000530277 HNRNPUQ00839 825 aaKnown RBP eCLIP17.31■□□□□ 0.36
SCN3B-206ENST00000530277 FAM9BQ8IZU0 186 aa17.3■□□□□ 0.36
SCN3B-206ENST00000530277 SLC4A1APQ9BWU0 796 aaKnown RBP17.28■□□□□ 0.36
SCN3B-206ENST00000530277 SALL2Q9Y467 1007 aaPredicted RBP17.28■□□□□ 0.36
SCN3B-206ENST00000530277 MTUS2Q5JR59 1369 aa17.26■□□□□ 0.35
SCN3B-206ENST00000530277 RAPGEF2Q9Y4G8 1499 aa17.23■□□□□ 0.35
SCN3B-206ENST00000530277 KIF27Q86VH2 1401 aa17.23■□□□□ 0.35
SCN3B-206ENST00000530277 VPS8Q8N3P4 1428 aa17.19■□□□□ 0.34
SCN3B-206ENST00000530277 KCNH8Q96L42 1107 aa17.19■□□□□ 0.34
SCN3B-206ENST00000530277 KDM2AQ9Y2K7 1162 aa17.17■□□□□ 0.34
SCN3B-206ENST00000530277 TOP2AP11388 1531 aaKnown RBP17.17■□□□□ 0.34
SCN3B-206ENST00000530277 CUX2O14529 1486 aa17.16■□□□□ 0.34
SCN3B-206ENST00000530277 CCNB3Q8WWL7 1395 aa17.14■□□□□ 0.33
SCN3B-206ENST00000530277 FOXD1Q16676 465 aa17.12■□□□□ 0.33
SCN3B-206ENST00000530277 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms