RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 NISCHQ9Y2I1 1504 aa17.68■□□□□ 0.42
PDGFRB-207ENST00000520579 PELP1Q8IZL8 1130 aaKnown RBP17.33■□□□□ 0.36
PDGFRB-207ENST00000520579 PPARGC1BQ86YN6 1023 aaKnown RBP17.06■□□□□ 0.32
PDGFRB-207ENST00000520579 SUPT5HO00267 1087 aaKnown RBP17.03■□□□□ 0.32
PDGFRB-207ENST00000520579 SHROOM4Q9ULL8 1493 aa16.99■□□□□ 0.31
PDGFRB-207ENST00000520579 MYT1Q01538 1121 aa16.98■□□□□ 0.31
PDGFRB-207ENST00000520579 PCGF6Q9BYE7 350 aa16.96■□□□□ 0.31
PDGFRB-207ENST00000520579 HRCP23327 699 aa16.87■□□□□ 0.29
PDGFRB-207ENST00000520579 EHMT2Q96KQ7 1210 aa16.32■□□□□ 0.2
PDGFRB-207ENST00000520579 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
PDGFRB-207ENST00000520579 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
PDGFRB-207ENST00000520579 CHIC1Q5VXU3 224 aa16.22■□□□□ 0.19
PDGFRB-207ENST00000520579 MYO15BQ96JP2 1530 aa16.21■□□□□ 0.19
PDGFRB-207ENST00000520579 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
PDGFRB-207ENST00000520579 TTBK1Q5TCY1 1321 aaPredicted RBP16.09■□□□□ 0.17
PDGFRB-207ENST00000520579 PRKCSHP14314 528 aaPredicted RBP16.09■□□□□ 0.17
PDGFRB-207ENST00000520579 FAM9AQ8IZU1 332 aaPredicted RBP15.96■□□□□ 0.15
PDGFRB-207ENST00000520579 TRIM26Q12899 539 aaPredicted RBP15.91■□□□□ 0.14
PDGFRB-207ENST00000520579 BCL11AQ9H165 835 aa15.89■□□□□ 0.13
PDGFRB-207ENST00000520579 GTF3C3Q9Y5Q9 886 aa15.81■□□□□ 0.12
PDGFRB-207ENST00000520579 YTHDC1Q96MU7 727 aaKnown RBP15.8■□□□□ 0.12
PDGFRB-207ENST00000520579 NEUROD1Q13562 356 aa15.8■□□□□ 0.12
PDGFRB-207ENST00000520579 ERICH6Q7L0X2 663 aa15.75■□□□□ 0.11
PDGFRB-207ENST00000520579 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
PDGFRB-207ENST00000520579 ACIN1Q9UKV3 1341 aaKnown RBP15.68■□□□□ 0.1
PDGFRB-207ENST00000520579 ZEB1P37275 1124 aaPredicted RBP15.66■□□□□ 0.1
PDGFRB-207ENST00000520579 CCER1Q8TC90 406 aaPredicted RBP15.62■□□□□ 0.09
PDGFRB-207ENST00000520579 CENPBP07199 599 aaPredicted RBP15.56■□□□□ 0.08
PDGFRB-207ENST00000520579 DIEXFQ68CQ4 756 aaKnown RBP15.5■□□□□ 0.07
PDGFRB-207ENST00000520579 DCAF1Q9Y4B6 1507 aa15.49■□□□□ 0.07
PDGFRB-207ENST00000520579 TRIM41Q8WV44 630 aa15.42■□□□□ 0.06
PDGFRB-207ENST00000520579 SLC24A1O60721 1099 aa15.31■□□□□ 0.04
PDGFRB-207ENST00000520579 APLP2Q06481 763 aa15.31■□□□□ 0.04
PDGFRB-207ENST00000520579 CCDC180Q9P1Z9 1646 aa15.23■□□□□ 0.03
PDGFRB-207ENST00000520579 MIER1Q8N108 512 aa15.13■□□□□ 0.01
PDGFRB-207ENST00000520579 BCANQ96GW7 911 aa15.1■□□□□ 0.01
PDGFRB-207ENST00000520579 ANP32EQ9BTT0 268 aa15.07■□□□□ 0
PDGFRB-207ENST00000520579 HNRNPUL2Q1KMD3 747 aaKnown RBP15.04■□□□□ -0
PDGFRB-207ENST00000520579 CSRNP3Q8WYN3 585 aa15.03■□□□□ -0
PDGFRB-207ENST00000520579 ZNF316A6NFI3 1004 aaPredicted RBP15.02■□□□□ -0
PDGFRB-207ENST00000520579 RANGAP1P46060 587 aaPredicted RBP15.02□□□□□ -0.01
PDGFRB-207ENST00000520579 ZCCHC6Q5VYS8 1495 aaKnown RBP14.96□□□□□ -0.01
PDGFRB-207ENST00000520579 ABCC9O60706 1549 aa14.95□□□□□ -0.02
PDGFRB-207ENST00000520579 EIF5BO60841 1220 aaKnown RBP14.93□□□□□ -0.02
PDGFRB-207ENST00000520579 ANO8Q9HCE9 1232 aaPredicted RBP14.88□□□□□ -0.03
PDGFRB-207ENST00000520579 UBTFP17480 764 aaKnown RBP14.82□□□□□ -0.04
PDGFRB-207ENST00000520579 SUPT16HQ9Y5B9 1047 aaKnown RBP14.81□□□□□ -0.04
PDGFRB-207ENST00000520579 TSHZ2Q9NRE2 1034 aa14.78□□□□□ -0.04
PDGFRB-207ENST00000520579 ITGAEP38570 1179 aa14.74□□□□□ -0.05
PDGFRB-207ENST00000520579 PLEKHG5O94827 1062 aa14.71□□□□□ -0.05
PDGFRB-207ENST00000520579 CCDC136Q96JN2 1154 aa14.71□□□□□ -0.05
PDGFRB-207ENST00000520579 FKBP8Q14318 412 aa14.66□□□□□ -0.06
PDGFRB-207ENST00000520579 KCNH8Q96L42 1107 aa14.66□□□□□ -0.06
PDGFRB-207ENST00000520579 DAXXQ9UER7 740 aaPredicted RBP14.6□□□□□ -0.07
PDGFRB-207ENST00000520579 IRX6P78412 446 aaPredicted RBP14.53□□□□□ -0.08
PDGFRB-207ENST00000520579 SALL2Q9Y467 1007 aaPredicted RBP14.52□□□□□ -0.08
PDGFRB-207ENST00000520579 NEFLP07196 543 aa14.52□□□□□ -0.09
PDGFRB-207ENST00000520579 TRIM52Q96A61 297 aa14.52□□□□□ -0.09
PDGFRB-207ENST00000520579 RSF1Q96T23 1441 aaPredicted RBP14.51□□□□□ -0.09
PDGFRB-207ENST00000520579 HIRIP3Q9BW71 556 aaPredicted RBP14.51□□□□□ -0.09
PDGFRB-207ENST00000520579 PODXL2Q9NZ53 605 aa14.5□□□□□ -0.09
PDGFRB-207ENST00000520579 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.49□□□□□ -0.09
PDGFRB-207ENST00000520579 RB1CC1Q8TDY2 1594 aa14.49□□□□□ -0.09
PDGFRB-207ENST00000520579 RBM19Q9Y4C8 960 aaKnown RBP14.47□□□□□ -0.09
PDGFRB-207ENST00000520579 UBE2Q2Q8WVN8 375 aa14.46□□□□□ -0.09
PDGFRB-207ENST00000520579 PABPN1Q86U42 306 aaKnown RBP eCLIP14.44□□□□□ -0.1
PDGFRB-207ENST00000520579 DDX10Q13206 875 aaKnown RBP14.41□□□□□ -0.1
PDGFRB-207ENST00000520579 PKNOX2Q96KN3 472 aa14.41□□□□□ -0.1
PDGFRB-207ENST00000520579 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
PDGFRB-207ENST00000520579 NBR1Q14596 966 aa14.38□□□□□ -0.11
PDGFRB-207ENST00000520579 CNGB1Q14028 1251 aaPredicted RBP14.36□□□□□ -0.11
PDGFRB-207ENST00000520579 RTN4Q9NQC3 1192 aaKnown RBP14.34□□□□□ -0.11
PDGFRB-207ENST00000520579 SCRIBQ14160 1630 aa14.34□□□□□ -0.11
PDGFRB-207ENST00000520579 MSH5O43196 834 aa14.32□□□□□ -0.12
PDGFRB-207ENST00000520579 SOGA1O94964 1423 aa14.28□□□□□ -0.12
PDGFRB-207ENST00000520579 SENP3-EIF4A1A0A087X0R7 540 aa14.27□□□□□ -0.12
PDGFRB-207ENST00000520579 DEKP35659 375 aaKnown RBP14.26□□□□□ -0.13
PDGFRB-207ENST00000520579 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
PDGFRB-207ENST00000520579 CLSPNQ9HAW4 1339 aa14.21□□□□□ -0.13
PDGFRB-207ENST00000520579 CDK11AQ9UQ88 783 aaPredicted RBP14.21□□□□□ -0.14
PDGFRB-207ENST00000520579 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
PDGFRB-207ENST00000520579 ABCC8Q09428 1581 aa14.19□□□□□ -0.14
PDGFRB-207ENST00000520579 RUSC2Q8N2Y8 1516 aa14.19□□□□□ -0.14
PDGFRB-207ENST00000520579 ATP1B4Q9UN42 357 aaPredicted RBP14.18□□□□□ -0.14
PDGFRB-207ENST00000520579 HNRNPUQ00839 825 aaKnown RBP eCLIP14.15□□□□□ -0.14
PDGFRB-207ENST00000520579 SIN3AQ96ST3 1273 aa14.15□□□□□ -0.14
PDGFRB-207ENST00000520579 A0A0U1RQG5 324 aaPredicted RBP14.11□□□□□ -0.15
PDGFRB-207ENST00000520579 ANP32CO43423 234 aa14.11□□□□□ -0.15
PDGFRB-207ENST00000520579 B4GALNT3Q6L9W6 998 aa14.1□□□□□ -0.15
PDGFRB-207ENST00000520579 TNIKQ9UKE5 1360 aa14.09□□□□□ -0.15
PDGFRB-207ENST00000520579 KANK4Q5T7N3 995 aaPredicted RBP14.07□□□□□ -0.16
PDGFRB-207ENST00000520579 NACADO15069 1562 aa14.06□□□□□ -0.16
PDGFRB-207ENST00000520579 NPM2Q86SE8 214 aaKnown RBP14.05□□□□□ -0.16
PDGFRB-207ENST00000520579 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
PDGFRB-207ENST00000520579 DHX57Q6P158 1386 aaKnown RBP14.05□□□□□ -0.16
PDGFRB-207ENST00000520579 MROH2BQ7Z745 1585 aa14.05□□□□□ -0.16
PDGFRB-207ENST00000520579 FAM50AQ14320 339 aaKnown RBP14.05□□□□□ -0.16
PDGFRB-207ENST00000520579 CLIP1P30622 1438 aa14.04□□□□□ -0.16
PDGFRB-207ENST00000520579 ERICH6BQ5W0A0 696 aa14.03□□□□□ -0.16
PDGFRB-207ENST00000520579 RTL5Q5HYW3 569 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms