RNA–Protein interactions for RNA: ENST00000520399.1

ERGIC1-208, Transcript of endoplasmic reticulum-golgi intermediate compartment 1, humanhuman

TSL 1 (best)

Gene ERGIC1, Length 5,687 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC1-208ENST00000520399 DCAF8L2P0C7V8 631 aa20.69■□□□□ 0.9
ERGIC1-208ENST00000520399 MYT1Q01538 1121 aa20.31■□□□□ 0.84
ERGIC1-208ENST00000520399 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
ERGIC1-208ENST00000520399 PELP1Q8IZL8 1130 aaKnown RBP20.19■□□□□ 0.82
ERGIC1-208ENST00000520399 SUPT5HO00267 1087 aaKnown RBP19.7■□□□□ 0.74
ERGIC1-208ENST00000520399 SHROOM4Q9ULL8 1493 aa19.45■□□□□ 0.7
ERGIC1-208ENST00000520399 EHMT2Q96KQ7 1210 aa19■□□□□ 0.63
ERGIC1-208ENST00000520399 ERICH6Q7L0X2 663 aa18.84■□□□□ 0.61
ERGIC1-208ENST00000520399 TTBK1Q5TCY1 1321 aaPredicted RBP18.76■□□□□ 0.59
ERGIC1-208ENST00000520399 APLP2Q06481 763 aa18.75■□□□□ 0.59
ERGIC1-208ENST00000520399 CCER1Q8TC90 406 aaPredicted RBP18.71■□□□□ 0.59
ERGIC1-208ENST00000520399 CENPBP07199 599 aaPredicted RBP18.58■□□□□ 0.56
ERGIC1-208ENST00000520399 FAM9AQ8IZU1 332 aaPredicted RBP18.56■□□□□ 0.56
ERGIC1-208ENST00000520399 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
ERGIC1-208ENST00000520399 TRIM41Q8WV44 630 aa18.31■□□□□ 0.52
ERGIC1-208ENST00000520399 RANGAP1P46060 587 aaPredicted RBP18.21■□□□□ 0.51
ERGIC1-208ENST00000520399 ZEB1P37275 1124 aaPredicted RBP18.2■□□□□ 0.5
ERGIC1-208ENST00000520399 ATP1B4Q9UN42 357 aaPredicted RBP18.07■□□□□ 0.48
ERGIC1-208ENST00000520399 UBTFP17480 764 aaKnown RBP18.06■□□□□ 0.48
ERGIC1-208ENST00000520399 NEFLP07196 543 aa18.01■□□□□ 0.47
ERGIC1-208ENST00000520399 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
ERGIC1-208ENST00000520399 DAXXQ9UER7 740 aaPredicted RBP17.89■□□□□ 0.45
ERGIC1-208ENST00000520399 HRCP23327 699 aa17.85■□□□□ 0.45
ERGIC1-208ENST00000520399 TRIM26Q12899 539 aaPredicted RBP17.71■□□□□ 0.43
ERGIC1-208ENST00000520399 PPARGC1BQ86YN6 1023 aaKnown RBP17.7■□□□□ 0.42
ERGIC1-208ENST00000520399 CHIC1Q5VXU3 224 aa17.51■□□□□ 0.39
ERGIC1-208ENST00000520399 LOC105371045A0A1W2PR82 267 aa17.47■□□□□ 0.39
ERGIC1-208ENST00000520399 ITGAEP38570 1179 aa17.45■□□□□ 0.38
ERGIC1-208ENST00000520399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
ERGIC1-208ENST00000520399 HNRNPUL2Q1KMD3 747 aaKnown RBP17.44■□□□□ 0.38
ERGIC1-208ENST00000520399 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
ERGIC1-208ENST00000520399 ZNF316A6NFI3 1004 aaPredicted RBP17.38■□□□□ 0.37
ERGIC1-208ENST00000520399 GLIPR1L2Q4G1C9 344 aa17.38■□□□□ 0.37
ERGIC1-208ENST00000520399 MYT1LQ9UL68 1186 aa17.37■□□□□ 0.37
ERGIC1-208ENST00000520399 ABCC9O60706 1549 aa17.3■□□□□ 0.36
ERGIC1-208ENST00000520399 POLR3GLQ9BT43 218 aa17.29■□□□□ 0.36
ERGIC1-208ENST00000520399 GTF3C3Q9Y5Q9 886 aa17.24■□□□□ 0.35
ERGIC1-208ENST00000520399 CLSPNQ9HAW4 1339 aa17.2■□□□□ 0.34
ERGIC1-208ENST00000520399 PABPN1Q86U42 306 aaKnown RBP eCLIP17.17■□□□□ 0.34
ERGIC1-208ENST00000520399 FAM50AQ14320 339 aaKnown RBP17.09■□□□□ 0.33
ERGIC1-208ENST00000520399 EIF5BO60841 1220 aaKnown RBP17.08■□□□□ 0.33
ERGIC1-208ENST00000520399 SLC4A1APQ9BWU0 796 aaKnown RBP17.08■□□□□ 0.32
ERGIC1-208ENST00000520399 ACIN1Q9UKV3 1341 aaKnown RBP17.07■□□□□ 0.32
ERGIC1-208ENST00000520399 CNGB1Q14028 1251 aaPredicted RBP17.05■□□□□ 0.32
ERGIC1-208ENST00000520399 BCL11AQ9H165 835 aa17.03■□□□□ 0.32
ERGIC1-208ENST00000520399 DIEXFQ68CQ4 756 aaKnown RBP17.03■□□□□ 0.32
ERGIC1-208ENST00000520399 TRIM52Q96A61 297 aa16.99■□□□□ 0.31
ERGIC1-208ENST00000520399 ZBTB47Q9UFB7 747 aaPredicted RBP16.96■□□□□ 0.31
ERGIC1-208ENST00000520399 NEUROD1Q13562 356 aa16.9■□□□□ 0.3
ERGIC1-208ENST00000520399 ANP32EQ9BTT0 268 aa16.81■□□□□ 0.28
ERGIC1-208ENST00000520399 SCRIBQ14160 1630 aa16.81■□□□□ 0.28
ERGIC1-208ENST00000520399 SCAF1Q9H7N4 1312 aaKnown RBP16.79■□□□□ 0.28
ERGIC1-208ENST00000520399 FBLN2P98095 1184 aa16.76■□□□□ 0.27
ERGIC1-208ENST00000520399 ANP32CO43423 234 aa16.76■□□□□ 0.27
ERGIC1-208ENST00000520399 ZCCHC6Q5VYS8 1495 aaKnown RBP16.75■□□□□ 0.27
ERGIC1-208ENST00000520399 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
ERGIC1-208ENST00000520399 CSRNP3Q8WYN3 585 aa16.73■□□□□ 0.27
ERGIC1-208ENST00000520399 ZNF326Q5BKZ1 582 aaKnown RBP16.73■□□□□ 0.27
ERGIC1-208ENST00000520399 SLC24A1O60721 1099 aa16.71■□□□□ 0.26
ERGIC1-208ENST00000520399 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
ERGIC1-208ENST00000520399 P3H3Q8IVL6 736 aa16.67■□□□□ 0.26
ERGIC1-208ENST00000520399 ANP32BQ92688 251 aaKnown RBP16.62■□□□□ 0.25
ERGIC1-208ENST00000520399 BCANQ96GW7 911 aa16.6■□□□□ 0.25
ERGIC1-208ENST00000520399 CANXP27824 592 aaKnown RBP16.59■□□□□ 0.25
ERGIC1-208ENST00000520399 ARID3CA6NKF2 412 aa16.58■□□□□ 0.25
ERGIC1-208ENST00000520399 NEFMP07197 916 aa16.53■□□□□ 0.24
ERGIC1-208ENST00000520399 ZNF777Q9ULD5 760 aaPredicted RBP16.52■□□□□ 0.24
ERGIC1-208ENST00000520399 ANP32AP39687 249 aaKnown RBP16.52■□□□□ 0.24
ERGIC1-208ENST00000520399 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
ERGIC1-208ENST00000520399 CDK11BP21127 795 aaKnown RBP16.46■□□□□ 0.23
ERGIC1-208ENST00000520399 PRKCSHP14314 528 aaPredicted RBP16.43■□□□□ 0.22
ERGIC1-208ENST00000520399 TONSLQ96HA7 1378 aa16.4■□□□□ 0.22
ERGIC1-208ENST00000520399 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
ERGIC1-208ENST00000520399 TNNT2P45379 298 aaPredicted RBP16.35■□□□□ 0.21
ERGIC1-208ENST00000520399 HSP90AA1P07900 732 aaKnown RBP16.34■□□□□ 0.21
ERGIC1-208ENST00000520399 NBR1Q14596 966 aa16.27■□□□□ 0.19
ERGIC1-208ENST00000520399 ESF1Q9H501 851 aaKnown RBP16.26■□□□□ 0.19
ERGIC1-208ENST00000520399 NCLP19338 710 aaKnown RBP16.24■□□□□ 0.19
ERGIC1-208ENST00000520399 CHGAP10645 457 aaKnown RBP16.23■□□□□ 0.19
ERGIC1-208ENST00000520399 NPM2Q86SE8 214 aaKnown RBP16.23■□□□□ 0.19
ERGIC1-208ENST00000520399 UPF2Q9HAU5 1272 aaKnown RBP16.22■□□□□ 0.19
ERGIC1-208ENST00000520399 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
ERGIC1-208ENST00000520399 ERICH6BQ5W0A0 696 aa16.22■□□□□ 0.19
ERGIC1-208ENST00000520399 CHIC2Q9UKJ5 165 aa16.22■□□□□ 0.19
ERGIC1-208ENST00000520399 CLIP1P30622 1438 aa16.22■□□□□ 0.19
ERGIC1-208ENST00000520399 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.19
ERGIC1-208ENST00000520399 MTUS2Q5JR59 1369 aa16.2■□□□□ 0.18
ERGIC1-208ENST00000520399 DDX10Q13206 875 aaKnown RBP16.19■□□□□ 0.18
ERGIC1-208ENST00000520399 FKBP8Q14318 412 aa16.19■□□□□ 0.18
ERGIC1-208ENST00000520399 GOLGA3Q08378 1498 aa16.18■□□□□ 0.18
ERGIC1-208ENST00000520399 NACADO15069 1562 aa16.18■□□□□ 0.18
ERGIC1-208ENST00000520399 HNRNPUQ00839 825 aaKnown RBP eCLIP16.17■□□□□ 0.18
ERGIC1-208ENST00000520399 EEA1Q15075 1411 aa16.17■□□□□ 0.18
ERGIC1-208ENST00000520399 RSF1Q96T23 1441 aaPredicted RBP16.16■□□□□ 0.18
ERGIC1-208ENST00000520399 FAM9BQ8IZU0 186 aa16.16■□□□□ 0.18
ERGIC1-208ENST00000520399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.15■□□□□ 0.18
ERGIC1-208ENST00000520399 CHMP7Q8WUX9 453 aaPredicted RBP16.12■□□□□ 0.17
ERGIC1-208ENST00000520399 TSPY4P0CV99 314 aa16.12■□□□□ 0.17
ERGIC1-208ENST00000520399 TSPY10P0CW01 314 aa16.12■□□□□ 0.17
ERGIC1-208ENST00000520399 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms