RNA–Protein interactions for RNA: ENST00000518985.1

PCM1-211, Transcript of pericentriolar material 1, humanhuman

TSL 3

Gene PCM1, Length 382 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-211ENST00000518985 CHIC1Q5VXU3 224 aa23■■□□□ 1.27
PCM1-211ENST00000518985 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
PCM1-211ENST00000518985 PHF23Q9BUL5 403 aaPredicted RBP20.3■□□□□ 0.84
PCM1-211ENST00000518985 SENP3Q9H4L4 574 aaPredicted RBP19.22■□□□□ 0.67
PCM1-211ENST00000518985 PLPPR3Q6T4P5 718 aa19■□□□□ 0.63
PCM1-211ENST00000518985 ADRA2BP18089 450 aa17.74■□□□□ 0.43
PCM1-211ENST00000518985 FOXD1Q16676 465 aa17.73■□□□□ 0.43
PCM1-211ENST00000518985 PPP6R1Q9UPN7 881 aa17.65■□□□□ 0.42
PCM1-211ENST00000518985 KCNA4P22459 653 aa17.29■□□□□ 0.36
PCM1-211ENST00000518985 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
PCM1-211ENST00000518985 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
PCM1-211ENST00000518985 PIAS4Q8N2W9 510 aaPredicted RBP16.89■□□□□ 0.29
PCM1-211ENST00000518985 PPP4R3CPQ6ZMV5 832 aa16.82■□□□□ 0.28
PCM1-211ENST00000518985 NCBP3Q53F19 620 aaKnown RBP16.6■□□□□ 0.25
PCM1-211ENST00000518985 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
PCM1-211ENST00000518985 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
PCM1-211ENST00000518985 NPM3O75607 178 aaKnown RBP16.37■□□□□ 0.21
PCM1-211ENST00000518985 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
PCM1-211ENST00000518985 SCAF1Q9H7N4 1312 aaKnown RBP16.17■□□□□ 0.18
PCM1-211ENST00000518985 MSH5O43196 834 aa16.07■□□□□ 0.16
PCM1-211ENST00000518985 ZBTB22O15209 634 aa15.94■□□□□ 0.14
PCM1-211ENST00000518985 DNAJC5BQ9UF47 199 aa15.89■□□□□ 0.13
PCM1-211ENST00000518985 MAPK8IP2Q13387 824 aaPredicted RBP15.78■□□□□ 0.12
PCM1-211ENST00000518985 POTEDQ86YR6 584 aa15.73■□□□□ 0.11
PCM1-211ENST00000518985 FOXD4L1Q9NU39 408 aa15.71■□□□□ 0.11
PCM1-211ENST00000518985 RNF216Q9NWF9 866 aaPredicted RBP15.71■□□□□ 0.11
PCM1-211ENST00000518985 DMRT2Q9Y5R5 561 aa15.47■□□□□ 0.07
PCM1-211ENST00000518985 HOXD11P31277 338 aaPredicted RBP15.46■□□□□ 0.07
PCM1-211ENST00000518985 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
PCM1-211ENST00000518985 ATXN8OSP0DMR3 200 aa15.13■□□□□ 0.01
PCM1-211ENST00000518985 MYCNP04198 464 aaPredicted RBP15.12■□□□□ 0.01
PCM1-211ENST00000518985 CCDC180Q9P1Z9 1646 aa15.07■□□□□ 0
PCM1-211ENST00000518985 AMER1Q5JTC6 1135 aaPredicted RBP14.85□□□□□ -0.03
PCM1-211ENST00000518985 RTN4Q9NQC3 1192 aaKnown RBP14.8□□□□□ -0.04
PCM1-211ENST00000518985 FKBP8Q14318 412 aa14.79□□□□□ -0.04
PCM1-211ENST00000518985 ABCC9O60706 1549 aa14.78□□□□□ -0.04
PCM1-211ENST00000518985 DCAF8L1A6NGE4 600 aa14.66□□□□□ -0.06
PCM1-211ENST00000518985 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.66□□□□□ -0.064e-6■□□□□ 8.4
PCM1-211ENST00000518985 ATF5Q9Y2D1 282 aaPredicted RBP14.64□□□□□ -0.07
PCM1-211ENST00000518985 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
PCM1-211ENST00000518985 HNRNPUL2Q1KMD3 747 aaKnown RBP14.63□□□□□ -0.07
PCM1-211ENST00000518985 SLC24A1O60721 1099 aa14.61□□□□□ -0.07
PCM1-211ENST00000518985 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
PCM1-211ENST00000518985 U3KPZ7 1027 aaPredicted RBP14.55□□□□□ -0.08
PCM1-211ENST00000518985 ZNF219Q9P2Y4 722 aaPredicted RBP14.31□□□□□ -0.12
PCM1-211ENST00000518985 APLP2Q06481 763 aa14.3□□□□□ -0.12
PCM1-211ENST00000518985 RB1CC1Q8TDY2 1594 aa14.17□□□□□ -0.14
PCM1-211ENST00000518985 NACADO15069 1562 aa14.16□□□□□ -0.14
PCM1-211ENST00000518985 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
PCM1-211ENST00000518985 FBXO3Q9UK99 471 aa14.09□□□□□ -0.15
PCM1-211ENST00000518985 MYO15BQ96JP2 1530 aa14.09□□□□□ -0.15
PCM1-211ENST00000518985 SPDYE4A6NLX3 237 aa14.08□□□□□ -0.16
PCM1-211ENST00000518985 MKRN4PQ13434 485 aaPredicted RBP14.06□□□□□ -0.16
PCM1-211ENST00000518985 PROM2Q8N271 834 aa14.04□□□□□ -0.16
PCM1-211ENST00000518985 DCAF8L2P0C7V8 631 aa14.03□□□□□ -0.16
PCM1-211ENST00000518985 DCAF1Q9Y4B6 1507 aa14.01□□□□□ -0.17
PCM1-211ENST00000518985 UNC13AQ9UPW8 1703 aa13.98□□□□□ -0.17
PCM1-211ENST00000518985 FBLN2P98095 1184 aa13.96□□□□□ -0.17
PCM1-211ENST00000518985 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
PCM1-211ENST00000518985 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
PCM1-211ENST00000518985 VASPP50552 380 aaPredicted RBP13.88□□□□□ -0.19
PCM1-211ENST00000518985 BICRAQ9NZM4 1560 aa13.87□□□□□ -0.19
PCM1-211ENST00000518985 POLA2Q14181 598 aa13.86□□□□□ -0.19
PCM1-211ENST00000518985 RNF39Q9H2S5 420 aa13.85□□□□□ -0.19
PCM1-211ENST00000518985 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
PCM1-211ENST00000518985 CAPN15O75808 1086 aa13.78□□□□□ -0.2
PCM1-211ENST00000518985 IFNLR1Q8IU57 520 aaPredicted RBP13.75□□□□□ -0.21
PCM1-211ENST00000518985 ZBTB12Q9Y330 459 aaPredicted RBP13.74□□□□□ -0.21
PCM1-211ENST00000518985 SCRIBQ14160 1630 aa13.74□□□□□ -0.21
PCM1-211ENST00000518985 C1QBPQ07021 282 aaKnown RBP13.72□□□□□ -0.21
PCM1-211ENST00000518985 PLCB2Q00722 1185 aa13.68□□□□□ -0.22
PCM1-211ENST00000518985 ABCB7O75027 752 aa13.59□□□□□ -0.23
PCM1-211ENST00000518985 PKD2Q13563 968 aa13.59□□□□□ -0.23
PCM1-211ENST00000518985 SHROOM4Q9ULL8 1493 aa13.59□□□□□ -0.23
PCM1-211ENST00000518985 SPOCK2Q92563 424 aa13.45□□□□□ -0.26
PCM1-211ENST00000518985 ZNF692Q9BU19 519 aaPredicted RBP13.45□□□□□ -0.26
PCM1-211ENST00000518985 STAG3Q9UJ98 1225 aa13.45□□□□□ -0.26
PCM1-211ENST00000518985 DSG3P32926 999 aa13.43□□□□□ -0.26
PCM1-211ENST00000518985 EIF4G1Q04637 1599 aaKnown RBP13.43□□□□□ -0.26
PCM1-211ENST00000518985 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
PCM1-211ENST00000518985 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
PCM1-211ENST00000518985 HAP1P54257 671 aaPredicted RBP13.42□□□□□ -0.26
PCM1-211ENST00000518985 SPDYE2Q495Y8 402 aa13.42□□□□□ -0.26
PCM1-211ENST00000518985 SSUH2Q9Y2M2 353 aa13.42□□□□□ -0.26
PCM1-211ENST00000518985 KLHL34Q8N239 644 aa13.41□□□□□ -0.26
PCM1-211ENST00000518985 CC2D2AQ9P2K1 1620 aa13.39□□□□□ -0.27
PCM1-211ENST00000518985 CACNB1Q02641 598 aaPredicted RBP13.38□□□□□ -0.27
PCM1-211ENST00000518985 OSCARQ8IYS5 282 aa13.38□□□□□ -0.27
PCM1-211ENST00000518985 ECM2O94769 699 aaPredicted RBP13.33□□□□□ -0.28
PCM1-211ENST00000518985 PLCD3Q8N3E9 789 aa13.31□□□□□ -0.28
PCM1-211ENST00000518985 VSIG10Q8N0Z9 540 aa13.3□□□□□ -0.28
PCM1-211ENST00000518985 BBXQ8WY36 941 aaPredicted RBP13.29□□□□□ -0.28
PCM1-211ENST00000518985 CECR2Q9BXF3 1484 aa13.28□□□□□ -0.28
PCM1-211ENST00000518985 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.25□□□□□ -0.29
PCM1-211ENST00000518985 MIER1Q8N108 512 aa13.24□□□□□ -0.29
PCM1-211ENST00000518985 NPM1P06748 294 aaKnown RBP eCLIP13.22□□□□□ -0.29
PCM1-211ENST00000518985 BCANQ96GW7 911 aa13.22□□□□□ -0.29
PCM1-211ENST00000518985 RGL2O15211 777 aa13.19□□□□□ -0.3
PCM1-211ENST00000518985 ZBTB47Q9UFB7 747 aaPredicted RBP13.16□□□□□ -0.3
PCM1-211ENST00000518985 SMARCA4P51532 1647 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms