RNA–Protein interactions for RNA: ENST00000517417.2

PCDHGA1-202, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHGA1, Length 4,604 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-202ENST00000517417 NISCHQ9Y2I1 1504 aa20.38■□□□□ 0.85
PCDHGA1-202ENST00000517417 DCAF8L2P0C7V8 631 aa19.06■□□□□ 0.64
PCDHGA1-202ENST00000517417 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
PCDHGA1-202ENST00000517417 SHROOM4Q9ULL8 1493 aa18.09■□□□□ 0.49
PCDHGA1-202ENST00000517417 EHMT2Q96KQ7 1210 aa17.58■□□□□ 0.41
PCDHGA1-202ENST00000517417 PCGF6Q9BYE7 350 aa17.45■□□□□ 0.38
PCDHGA1-202ENST00000517417 CCDC180Q9P1Z9 1646 aa17.33■□□□□ 0.36
PCDHGA1-202ENST00000517417 HRCP23327 699 aa17.29■□□□□ 0.36
PCDHGA1-202ENST00000517417 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
PCDHGA1-202ENST00000517417 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
PCDHGA1-202ENST00000517417 ZCCHC6Q5VYS8 1495 aaKnown RBP17.13■□□□□ 0.33
PCDHGA1-202ENST00000517417 PPARGC1BQ86YN6 1023 aaKnown RBP16.99■□□□□ 0.31
PCDHGA1-202ENST00000517417 TTBK1Q5TCY1 1321 aaPredicted RBP16.94■□□□□ 0.3
PCDHGA1-202ENST00000517417 LOC105371045A0A1W2PR82 267 aa16.89■□□□□ 0.29
PCDHGA1-202ENST00000517417 APLP2Q06481 763 aa16.87■□□□□ 0.29
PCDHGA1-202ENST00000517417 ABCC9O60706 1549 aa16.84■□□□□ 0.29
PCDHGA1-202ENST00000517417 TRIM26Q12899 539 aaPredicted RBP16.83■□□□□ 0.29
PCDHGA1-202ENST00000517417 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
PCDHGA1-202ENST00000517417 RANGAP1P46060 587 aaPredicted RBP16.76■□□□□ 0.27
PCDHGA1-202ENST00000517417 TRIM41Q8WV44 630 aa16.75■□□□□ 0.27
PCDHGA1-202ENST00000517417 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
PCDHGA1-202ENST00000517417 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
PCDHGA1-202ENST00000517417 DCAF1Q9Y4B6 1507 aa16.58■□□□□ 0.25
PCDHGA1-202ENST00000517417 UBTFP17480 764 aaKnown RBP16.5■□□□□ 0.23
PCDHGA1-202ENST00000517417 CCER1Q8TC90 406 aaPredicted RBP16.5■□□□□ 0.23
PCDHGA1-202ENST00000517417 ATP1B4Q9UN42 357 aaPredicted RBP16.46■□□□□ 0.23
PCDHGA1-202ENST00000517417 SCRIBQ14160 1630 aa16.41■□□□□ 0.22
PCDHGA1-202ENST00000517417 CENPBP07199 599 aaPredicted RBP16.41■□□□□ 0.22
PCDHGA1-202ENST00000517417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.24■□□□□ 0.19
PCDHGA1-202ENST00000517417 NACADO15069 1562 aa16.18■□□□□ 0.18
PCDHGA1-202ENST00000517417 PABPN1Q86U42 306 aaKnown RBP eCLIP16.18■□□□□ 0.18
PCDHGA1-202ENST00000517417 RB1CC1Q8TDY2 1594 aa16.18■□□□□ 0.18
PCDHGA1-202ENST00000517417 YTHDC1Q96MU7 727 aaKnown RBP16.16■□□□□ 0.18
PCDHGA1-202ENST00000517417 DIEXFQ68CQ4 756 aaKnown RBP16.11■□□□□ 0.17
PCDHGA1-202ENST00000517417 SCAF1Q9H7N4 1312 aaKnown RBP16.09■□□□□ 0.17
PCDHGA1-202ENST00000517417 RSF1Q96T23 1441 aaPredicted RBP16.06■□□□□ 0.16
PCDHGA1-202ENST00000517417 MYT1Q01538 1121 aa16.05■□□□□ 0.16
PCDHGA1-202ENST00000517417 ACIN1Q9UKV3 1341 aaKnown RBP16.03■□□□□ 0.16
PCDHGA1-202ENST00000517417 ITGAEP38570 1179 aa16.03■□□□□ 0.16
PCDHGA1-202ENST00000517417 GTF3C3Q9Y5Q9 886 aa16.02■□□□□ 0.16
PCDHGA1-202ENST00000517417 CECR2Q9BXF3 1484 aa16.01■□□□□ 0.15
PCDHGA1-202ENST00000517417 HNRNPUL2Q1KMD3 747 aaKnown RBP15.94■□□□□ 0.14
PCDHGA1-202ENST00000517417 NEUROD1Q13562 356 aa15.9■□□□□ 0.14
PCDHGA1-202ENST00000517417 MROH2BQ7Z745 1585 aa15.88■□□□□ 0.13
PCDHGA1-202ENST00000517417 ZNF316A6NFI3 1004 aaPredicted RBP15.81■□□□□ 0.12
PCDHGA1-202ENST00000517417 NEFLP07196 543 aa15.77■□□□□ 0.12
PCDHGA1-202ENST00000517417 ERICH6Q7L0X2 663 aa15.76■□□□□ 0.11
PCDHGA1-202ENST00000517417 WIZO95785 1651 aa15.76■□□□□ 0.11
PCDHGA1-202ENST00000517417 POLR3GLQ9BT43 218 aa15.71■□□□□ 0.11
PCDHGA1-202ENST00000517417 UNC13AQ9UPW8 1703 aa15.7■□□□□ 0.1
PCDHGA1-202ENST00000517417 CNGB1Q14028 1251 aaPredicted RBP15.69■□□□□ 0.1
PCDHGA1-202ENST00000517417 MYT1LQ9UL68 1186 aa15.67■□□□□ 0.1
PCDHGA1-202ENST00000517417 BAZ1AQ9NRL2 1556 aaPredicted RBP15.67■□□□□ 0.1
PCDHGA1-202ENST00000517417 CSRNP3Q8WYN3 585 aa15.66■□□□□ 0.1
PCDHGA1-202ENST00000517417 BICRAQ9NZM4 1560 aa15.57■□□□□ 0.08
PCDHGA1-202ENST00000517417 SMARCA4P51532 1647 aa15.56■□□□□ 0.08
PCDHGA1-202ENST00000517417 CEP162Q5TB80 1403 aa15.55■□□□□ 0.08
PCDHGA1-202ENST00000517417 FAM50AQ14320 339 aaKnown RBP15.55■□□□□ 0.08
PCDHGA1-202ENST00000517417 MIER1Q8N108 512 aa15.53■□□□□ 0.08
PCDHGA1-202ENST00000517417 CCDC88BA6NC98 1476 aa15.46■□□□□ 0.07
PCDHGA1-202ENST00000517417 TOP2AP11388 1531 aaKnown RBP15.45■□□□□ 0.06
PCDHGA1-202ENST00000517417 TNIKQ9UKE5 1360 aa15.43■□□□□ 0.06
PCDHGA1-202ENST00000517417 TRIM52Q96A61 297 aa15.4■□□□□ 0.06
PCDHGA1-202ENST00000517417 P3H3Q8IVL6 736 aa15.38■□□□□ 0.05
PCDHGA1-202ENST00000517417 EEA1Q15075 1411 aa15.37■□□□□ 0.05
PCDHGA1-202ENST00000517417 GOLGA3Q08378 1498 aa15.37■□□□□ 0.05
PCDHGA1-202ENST00000517417 SMARCA2P51531 1590 aa15.37■□□□□ 0.05
PCDHGA1-202ENST00000517417 BCANQ96GW7 911 aa15.36■□□□□ 0.05
PCDHGA1-202ENST00000517417 SOGA1O94964 1423 aa15.36■□□□□ 0.05
PCDHGA1-202ENST00000517417 ABCC8Q09428 1581 aa15.36■□□□□ 0.05
PCDHGA1-202ENST00000517417 FBLN2P98095 1184 aa15.36■□□□□ 0.05
PCDHGA1-202ENST00000517417 CLIP1P30622 1438 aa15.34■□□□□ 0.05
PCDHGA1-202ENST00000517417 ARID3CA6NKF2 412 aa15.32■□□□□ 0.04
PCDHGA1-202ENST00000517417 SLC4A1APQ9BWU0 796 aaKnown RBP15.32■□□□□ 0.04
PCDHGA1-202ENST00000517417 CLSPNQ9HAW4 1339 aa15.31■□□□□ 0.04
PCDHGA1-202ENST00000517417 ATAD2BQ9ULI0 1458 aa15.3■□□□□ 0.04
PCDHGA1-202ENST00000517417 BAZ1BQ9UIG0 1483 aaKnown RBP15.3■□□□□ 0.04
PCDHGA1-202ENST00000517417 WRNQ14191 1432 aaPredicted RBP eCLIP15.27■□□□□ 0.04
PCDHGA1-202ENST00000517417 ZNF326Q5BKZ1 582 aaKnown RBP15.27■□□□□ 0.03
PCDHGA1-202ENST00000517417 EIF4G1Q04637 1599 aaKnown RBP15.24■□□□□ 0.03
PCDHGA1-202ENST00000517417 CEP164Q9UPV0 1460 aa15.22■□□□□ 0.03
PCDHGA1-202ENST00000517417 DAXXQ9UER7 740 aaPredicted RBP15.19■□□□□ 0.02
PCDHGA1-202ENST00000517417 PEG3Q9GZU2 1588 aa15.18■□□□□ 0.02
PCDHGA1-202ENST00000517417 FKBP8Q14318 412 aa15.15■□□□□ 0.02
PCDHGA1-202ENST00000517417 ANP32CO43423 234 aa15.14■□□□□ 0.01
PCDHGA1-202ENST00000517417 SUPT16HQ9Y5B9 1047 aaKnown RBP15.13■□□□□ 0.01
PCDHGA1-202ENST00000517417 RUSC2Q8N2Y8 1516 aa15.12■□□□□ 0.01
PCDHGA1-202ENST00000517417 DDX10Q13206 875 aaKnown RBP15.11■□□□□ 0.01
PCDHGA1-202ENST00000517417 VPS8Q8N3P4 1428 aa15.11■□□□□ 0.01
PCDHGA1-202ENST00000517417 ZNF777Q9ULD5 760 aaPredicted RBP15.09■□□□□ 0.01
PCDHGA1-202ENST00000517417 ERCC6Q03468 1493 aa15.08■□□□□ 0
PCDHGA1-202ENST00000517417 NCAPD3P42695 1498 aa15.02□□□□□ -0.01
PCDHGA1-202ENST00000517417 SYNJ1O43426 1573 aa15□□□□□ -0.01
PCDHGA1-202ENST00000517417 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
PCDHGA1-202ENST00000517417 CDK11AQ9UQ88 783 aaPredicted RBP14.98□□□□□ -0.01
PCDHGA1-202ENST00000517417 PDS5BQ9NTI5 1447 aa14.97□□□□□ -0.01
PCDHGA1-202ENST00000517417 HIRIP3Q9BW71 556 aaPredicted RBP14.97□□□□□ -0.01
PCDHGA1-202ENST00000517417 KANK4Q5T7N3 995 aaPredicted RBP14.96□□□□□ -0.02
PCDHGA1-202ENST00000517417 RAPGEF2Q9Y4G8 1499 aa14.93□□□□□ -0.02
PCDHGA1-202ENST00000517417 HMGXB3Q12766 1538 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms