RNA–Protein interactions for RNA: ENST00000512979.1

TRIO-220, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 5

Gene TRIO, Length 292 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-220ENST00000512979 CHIC1Q5VXU3 224 aa27.22■■□□□ 1.95
TRIO-220ENST00000512979 AEBP2Q6ZN18 517 aaPredicted RBP26.99■■□□□ 1.91
TRIO-220ENST00000512979 PHF23Q9BUL5 403 aaPredicted RBP24.08■■□□□ 1.45
TRIO-220ENST00000512979 NISCHQ9Y2I1 1504 aa23.37■■□□□ 1.33
TRIO-220ENST00000512979 SENP3Q9H4L4 574 aaPredicted RBP22.7■■□□□ 1.22
TRIO-220ENST00000512979 PLPPR3Q6T4P5 718 aa22.51■■□□□ 1.19
TRIO-220ENST00000512979 ADRA2BP18089 450 aa21.13■□□□□ 0.97
TRIO-220ENST00000512979 FOXD1Q16676 465 aa21■□□□□ 0.95
TRIO-220ENST00000512979 PPP6R1Q9UPN7 881 aa20.96■□□□□ 0.95
TRIO-220ENST00000512979 CCDC180Q9P1Z9 1646 aa20.89■□□□□ 0.93
TRIO-220ENST00000512979 ABCC9O60706 1549 aa20.87■□□□□ 0.93
TRIO-220ENST00000512979 KCNA4P22459 653 aa20.6■□□□□ 0.89
TRIO-220ENST00000512979 EHMT2Q96KQ7 1210 aa20.31■□□□□ 0.84
TRIO-220ENST00000512979 PIAS4Q8N2W9 510 aaPredicted RBP20.03■□□□□ 0.8
TRIO-220ENST00000512979 PPP4R3CPQ6ZMV5 832 aa19.97■□□□□ 0.79
TRIO-220ENST00000512979 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
TRIO-220ENST00000512979 NACADO15069 1562 aa19.76■□□□□ 0.75
TRIO-220ENST00000512979 SLC4A1APQ9BWU0 796 aaKnown RBP19.76■□□□□ 0.75
TRIO-220ENST00000512979 DCAF8L2P0C7V8 631 aa19.75■□□□□ 0.75
TRIO-220ENST00000512979 NCBP3Q53F19 620 aaKnown RBP19.68■□□□□ 0.74
TRIO-220ENST00000512979 CSRNP3Q8WYN3 585 aa19.61■□□□□ 0.73
TRIO-220ENST00000512979 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
TRIO-220ENST00000512979 DNAJC5BQ9UF47 199 aa19.49■□□□□ 0.71
TRIO-220ENST00000512979 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
TRIO-220ENST00000512979 NPM3O75607 178 aaKnown RBP19.45■□□□□ 0.7
TRIO-220ENST00000512979 ZCCHC6Q5VYS8 1495 aaKnown RBP19.39■□□□□ 0.69
TRIO-220ENST00000512979 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
TRIO-220ENST00000512979 DCAF1Q9Y4B6 1507 aa19.29■□□□□ 0.68
TRIO-220ENST00000512979 BICRAQ9NZM4 1560 aa19.27■□□□□ 0.68
TRIO-220ENST00000512979 CNKSR2Q8WXI2 1034 aa19.18■□□□□ 0.66
TRIO-220ENST00000512979 SCAF1Q9H7N4 1312 aaKnown RBP19.12■□□□□ 0.65
TRIO-220ENST00000512979 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
TRIO-220ENST00000512979 SHROOM4Q9ULL8 1493 aa19.03■□□□□ 0.64
TRIO-220ENST00000512979 ZBTB22O15209 634 aa18.99■□□□□ 0.63
TRIO-220ENST00000512979 MSH5O43196 834 aa18.94■□□□□ 0.62
TRIO-220ENST00000512979 CC2D2AQ9P2K1 1620 aa18.83■□□□□ 0.61
TRIO-220ENST00000512979 EIF4G1Q04637 1599 aaKnown RBP18.81■□□□□ 0.6
TRIO-220ENST00000512979 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
TRIO-220ENST00000512979 MAPK8IP2Q13387 824 aaPredicted RBP18.79■□□□□ 0.6
TRIO-220ENST00000512979 FOXD4L1Q9NU39 408 aa18.64■□□□□ 0.57
TRIO-220ENST00000512979 RNF216Q9NWF9 866 aaPredicted RBP18.57■□□□□ 0.56
TRIO-220ENST00000512979 DMRT2Q9Y5R5 561 aa18.28■□□□□ 0.52
TRIO-220ENST00000512979 HOXD11P31277 338 aaPredicted RBP18.26■□□□□ 0.51
TRIO-220ENST00000512979 NCAPD3P42695 1498 aa18.25■□□□□ 0.51
TRIO-220ENST00000512979 ATAD2BQ9ULI0 1458 aa18.22■□□□□ 0.51
TRIO-220ENST00000512979 SMARCA4P51532 1647 aa18.2■□□□□ 0.5
TRIO-220ENST00000512979 SMARCA2P51531 1590 aa18.16■□□□□ 0.5
TRIO-220ENST00000512979 SLC4A2P04920 1241 aa18.14■□□□□ 0.49
TRIO-220ENST00000512979 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
TRIO-220ENST00000512979 HMGXB3Q12766 1538 aa18.11■□□□□ 0.49
TRIO-220ENST00000512979 BAZ1BQ9UIG0 1483 aaKnown RBP18.05■□□□□ 0.48
TRIO-220ENST00000512979 ERCC6Q03468 1493 aa18.02■□□□□ 0.48
TRIO-220ENST00000512979 MROH2BQ7Z745 1585 aa18.01■□□□□ 0.47
TRIO-220ENST00000512979 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
TRIO-220ENST00000512979 NESP48681 1621 aa17.94■□□□□ 0.46
TRIO-220ENST00000512979 CUX2O14529 1486 aa17.94■□□□□ 0.46
TRIO-220ENST00000512979 MYCNP04198 464 aaPredicted RBP17.91■□□□□ 0.46
TRIO-220ENST00000512979 ATXN8OSP0DMR3 200 aa17.87■□□□□ 0.45
TRIO-220ENST00000512979 DNAJC5Q9H3Z4 198 aa17.84■□□□□ 0.45
TRIO-220ENST00000512979 LAMC3Q9Y6N6 1575 aa17.8■□□□□ 0.44
TRIO-220ENST00000512979 WIZO95785 1651 aa17.78■□□□□ 0.44
TRIO-220ENST00000512979 RTN4Q9NQC3 1192 aaKnown RBP17.75■□□□□ 0.43
TRIO-220ENST00000512979 PDS5BQ9NTI5 1447 aa17.73■□□□□ 0.43
TRIO-220ENST00000512979 THOC2Q8NI27 1593 aaKnown RBP17.72■□□□□ 0.43
TRIO-220ENST00000512979 CADPSQ9ULU8 1353 aa17.72■□□□□ 0.43
TRIO-220ENST00000512979 AMER1Q5JTC6 1135 aaPredicted RBP17.7■□□□□ 0.42
TRIO-220ENST00000512979 FKBP8Q14318 412 aa17.68■□□□□ 0.42
TRIO-220ENST00000512979 RSF1Q96T23 1441 aaPredicted RBP17.68■□□□□ 0.42
TRIO-220ENST00000512979 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
TRIO-220ENST00000512979 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
TRIO-220ENST00000512979 MRC2Q9UBG0 1479 aa17.57■□□□□ 0.4
TRIO-220ENST00000512979 CFTRP13569 1480 aa17.52■□□□□ 0.4
TRIO-220ENST00000512979 CEP164Q9UPV0 1460 aa17.52■□□□□ 0.4
TRIO-220ENST00000512979 SLC24A1O60721 1099 aa17.52■□□□□ 0.4
TRIO-220ENST00000512979 WDR62O43379 1518 aa17.52■□□□□ 0.39
TRIO-220ENST00000512979 FANCD2Q9BXW9 1451 aa17.51■□□□□ 0.39
TRIO-220ENST00000512979 DCAF8L1A6NGE4 600 aa17.49■□□□□ 0.39
TRIO-220ENST00000512979 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.43■□□□□ 0.384e-7■□□□□ 11.1
TRIO-220ENST00000512979 ATF5Q9Y2D1 282 aaPredicted RBP17.43■□□□□ 0.38
TRIO-220ENST00000512979 CCDC88BA6NC98 1476 aa17.39■□□□□ 0.37
TRIO-220ENST00000512979 URB2Q14146 1524 aaKnown RBP17.35■□□□□ 0.37
TRIO-220ENST00000512979 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.29■□□□□ 0.36
TRIO-220ENST00000512979 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
TRIO-220ENST00000512979 SAMD1Q6SPF0 538 aaPredicted RBP17.29■□□□□ 0.36
TRIO-220ENST00000512979 PRDM2Q13029 1718 aa17.28■□□□□ 0.36
TRIO-220ENST00000512979 U3KPZ7 1027 aaPredicted RBP17.26■□□□□ 0.35
TRIO-220ENST00000512979 TOPBP1Q92547 1522 aa17.18■□□□□ 0.34
TRIO-220ENST00000512979 IFT140Q96RY7 1462 aa17.17■□□□□ 0.34
TRIO-220ENST00000512979 OSCARQ8IYS5 282 aa17.16■□□□□ 0.34
TRIO-220ENST00000512979 ABCC8Q09428 1581 aa17.14■□□□□ 0.33
TRIO-220ENST00000512979 ZNF608Q9ULD9 1512 aaPredicted RBP17.13■□□□□ 0.33
TRIO-220ENST00000512979 TRIM41Q8WV44 630 aa17.13■□□□□ 0.33
TRIO-220ENST00000512979 DNMBPQ6XZF7 1577 aa17.12■□□□□ 0.33
TRIO-220ENST00000512979 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
TRIO-220ENST00000512979 EIF4G3O43432 1585 aaKnown RBP17.02■□□□□ 0.31
TRIO-220ENST00000512979 SUPT5HO00267 1087 aaKnown RBP17■□□□□ 0.31
TRIO-220ENST00000512979 ZNF219Q9P2Y4 722 aaPredicted RBP17■□□□□ 0.31
TRIO-220ENST00000512979 TARBP1Q13395 1621 aaKnown RBP16.99■□□□□ 0.31
TRIO-220ENST00000512979 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.31
TRIO-220ENST00000512979 RAD54L2Q9Y4B4 1467 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms