RNA–Protein interactions for RNA: ENST00000504178.1

SYNPO2-205, Transcript of synaptopodin 2, humanhuman

TSL 1 (best)

Gene SYNPO2, Length 6,779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-205ENST00000504178 DCAF8L2P0C7V8 631 aa12.51□□□□□ -0.41
SYNPO2-205ENST00000504178 SUPT5HO00267 1087 aaKnown RBP11.77□□□□□ -0.53
SYNPO2-205ENST00000504178 NISCHQ9Y2I1 1504 aa11.69□□□□□ -0.54
SYNPO2-205ENST00000504178 SHROOM4Q9ULL8 1493 aa11.6□□□□□ -0.55
SYNPO2-205ENST00000504178 EHMT2Q96KQ7 1210 aa11.53□□□□□ -0.56
SYNPO2-205ENST00000504178 APLP2Q06481 763 aa11.33□□□□□ -0.6
SYNPO2-205ENST00000504178 PELP1Q8IZL8 1130 aaKnown RBP11.3□□□□□ -0.6
SYNPO2-205ENST00000504178 FAM9AQ8IZU1 332 aaPredicted RBP11.24□□□□□ -0.61
SYNPO2-205ENST00000504178 TTBK1Q5TCY1 1321 aaPredicted RBP11.14□□□□□ -0.63
SYNPO2-205ENST00000504178 RANGAP1P46060 587 aaPredicted RBP11.05□□□□□ -0.64
SYNPO2-205ENST00000504178 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
SYNPO2-205ENST00000504178 PCGF6Q9BYE7 350 aa10.94□□□□□ -0.66
SYNPO2-205ENST00000504178 TRIM41Q8WV44 630 aa10.9□□□□□ -0.66
SYNPO2-205ENST00000504178 ERICH6Q7L0X2 663 aa10.89□□□□□ -0.67
SYNPO2-205ENST00000504178 CCER1Q8TC90 406 aaPredicted RBP10.85□□□□□ -0.67
SYNPO2-205ENST00000504178 UBTFP17480 764 aaKnown RBP10.83□□□□□ -0.68
SYNPO2-205ENST00000504178 CENPBP07199 599 aaPredicted RBP10.81□□□□□ -0.68
SYNPO2-205ENST00000504178 ZEB1P37275 1124 aaPredicted RBP10.81□□□□□ -0.68
SYNPO2-205ENST00000504178 NEFLP07196 543 aa10.68□□□□□ -0.7
SYNPO2-205ENST00000504178 YTHDC1Q96MU7 727 aaKnown RBP10.65□□□□□ -0.7
SYNPO2-205ENST00000504178 MYT1LQ9UL68 1186 aa10.65□□□□□ -0.71
SYNPO2-205ENST00000504178 PPARGC1BQ86YN6 1023 aaKnown RBP10.62□□□□□ -0.71
SYNPO2-205ENST00000504178 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.59□□□□□ -0.71
SYNPO2-205ENST00000504178 HNRNPUL2Q1KMD3 747 aaKnown RBP10.59□□□□□ -0.71
SYNPO2-205ENST00000504178 POLR3GLQ9BT43 218 aa10.53□□□□□ -0.72
SYNPO2-205ENST00000504178 ITGAEP38570 1179 aa10.53□□□□□ -0.72
SYNPO2-205ENST00000504178 TRIM26Q12899 539 aaPredicted RBP10.46□□□□□ -0.73
SYNPO2-205ENST00000504178 CHIC1Q5VXU3 224 aa10.46□□□□□ -0.74
SYNPO2-205ENST00000504178 DAXXQ9UER7 740 aaPredicted RBP10.43□□□□□ -0.74
SYNPO2-205ENST00000504178 SLC4A1APQ9BWU0 796 aaKnown RBP10.4□□□□□ -0.74
SYNPO2-205ENST00000504178 CNGB1Q14028 1251 aaPredicted RBP10.39□□□□□ -0.75
SYNPO2-205ENST00000504178 LOC105371045A0A1W2PR82 267 aa10.32□□□□□ -0.76
SYNPO2-205ENST00000504178 HRCP23327 699 aa10.29□□□□□ -0.76
SYNPO2-205ENST00000504178 MYT1Q01538 1121 aa10.28□□□□□ -0.76
SYNPO2-205ENST00000504178 FAM50AQ14320 339 aaKnown RBP10.28□□□□□ -0.76
SYNPO2-205ENST00000504178 ABCC9O60706 1549 aa10.25□□□□□ -0.77
SYNPO2-205ENST00000504178 TRIM52Q96A61 297 aa10.25□□□□□ -0.77
SYNPO2-205ENST00000504178 PABPN1Q86U42 306 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNPO2-205ENST00000504178 ZNF316A6NFI3 1004 aaPredicted RBP10.2□□□□□ -0.78
SYNPO2-205ENST00000504178 CLSPNQ9HAW4 1339 aa10.2□□□□□ -0.78
SYNPO2-205ENST00000504178 NEUROD1Q13562 356 aa10.16□□□□□ -0.78
SYNPO2-205ENST00000504178 FBLN2P98095 1184 aa10.15□□□□□ -0.79
SYNPO2-205ENST00000504178 ZNF326Q5BKZ1 582 aaKnown RBP10.12□□□□□ -0.79
SYNPO2-205ENST00000504178 DIEXFQ68CQ4 756 aaKnown RBP10.12□□□□□ -0.79
SYNPO2-205ENST00000504178 RTL5Q5HYW3 569 aaPredicted RBP10.1□□□□□ -0.79
SYNPO2-205ENST00000504178 BCANQ96GW7 911 aa10.07□□□□□ -0.8
SYNPO2-205ENST00000504178 ZBTB47Q9UFB7 747 aaPredicted RBP10.06□□□□□ -0.8
SYNPO2-205ENST00000504178 SLC24A1O60721 1099 aa10.06□□□□□ -0.8
SYNPO2-205ENST00000504178 ANP32CO43423 234 aa10.04□□□□□ -0.8
SYNPO2-205ENST00000504178 ARID3CA6NKF2 412 aa10.02□□□□□ -0.81
SYNPO2-205ENST00000504178 CANXP27824 592 aaKnown RBP10.01□□□□□ -0.81
SYNPO2-205ENST00000504178 P3H3Q8IVL6 736 aa10□□□□□ -0.81
SYNPO2-205ENST00000504178 NEFMP07197 916 aa9.98□□□□□ -0.81
SYNPO2-205ENST00000504178 BCL11AQ9H165 835 aa9.97□□□□□ -0.81
SYNPO2-205ENST00000504178 ZNF777Q9ULD5 760 aaPredicted RBP9.97□□□□□ -0.81
SYNPO2-205ENST00000504178 CDK11AQ9UQ88 783 aaPredicted RBP9.94□□□□□ -0.82
SYNPO2-205ENST00000504178 ESF1Q9H501 851 aaKnown RBP9.92□□□□□ -0.82
SYNPO2-205ENST00000504178 SCRIBQ14160 1630 aa9.9□□□□□ -0.82
SYNPO2-205ENST00000504178 PLPPR3Q6T4P5 718 aa9.88□□□□□ -0.83
SYNPO2-205ENST00000504178 STAG3Q9UJ98 1225 aa9.87□□□□□ -0.83
SYNPO2-205ENST00000504178 GTF3C3Q9Y5Q9 886 aa9.86□□□□□ -0.83
SYNPO2-205ENST00000504178 CHGAP10645 457 aaKnown RBP9.86□□□□□ -0.83
SYNPO2-205ENST00000504178 CSRNP3Q8WYN3 585 aa9.85□□□□□ -0.83
SYNPO2-205ENST00000504178 NPM1P06748 294 aaKnown RBP eCLIP9.82□□□□□ -0.84
SYNPO2-205ENST00000504178 ANP32AP39687 249 aaKnown RBP9.79□□□□□ -0.84
SYNPO2-205ENST00000504178 TONSLQ96HA7 1378 aa9.78□□□□□ -0.84
SYNPO2-205ENST00000504178 NPM2Q86SE8 214 aaKnown RBP9.78□□□□□ -0.84
SYNPO2-205ENST00000504178 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNPO2-205ENST00000504178 CHIC2Q9UKJ5 165 aa9.71□□□□□ -0.85
SYNPO2-205ENST00000504178 HSP90AA1P07900 732 aaKnown RBP9.71□□□□□ -0.86
SYNPO2-205ENST00000504178 SCAF1Q9H7N4 1312 aaKnown RBP9.7□□□□□ -0.86
SYNPO2-205ENST00000504178 FAM9BQ8IZU0 186 aa9.7□□□□□ -0.86
SYNPO2-205ENST00000504178 UPF2Q9HAU5 1272 aaKnown RBP9.68□□□□□ -0.86
SYNPO2-205ENST00000504178 ANP32BQ92688 251 aaKnown RBP9.68□□□□□ -0.86
SYNPO2-205ENST00000504178 ACIN1Q9UKV3 1341 aaKnown RBP9.68□□□□□ -0.86
SYNPO2-205ENST00000504178 SALL2Q9Y467 1007 aaPredicted RBP9.67□□□□□ -0.86
SYNPO2-205ENST00000504178 FKBP8Q14318 412 aa9.67□□□□□ -0.86
SYNPO2-205ENST00000504178 HNRNPUQ00839 825 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNPO2-205ENST00000504178 WDR43Q15061 677 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNPO2-205ENST00000504178 CHMP7Q8WUX9 453 aaPredicted RBP9.66□□□□□ -0.86
SYNPO2-205ENST00000504178 ZCCHC6Q5VYS8 1495 aaKnown RBP9.66□□□□□ -0.86
SYNPO2-205ENST00000504178 KDM2AQ9Y2K7 1162 aa9.65□□□□□ -0.86
SYNPO2-205ENST00000504178 DDX10Q13206 875 aaKnown RBP9.65□□□□□ -0.87
SYNPO2-205ENST00000504178 ZBTB7CA1YPR0 619 aa9.64□□□□□ -0.87
SYNPO2-205ENST00000504178 TSPY4P0CV99 314 aa9.64□□□□□ -0.87
SYNPO2-205ENST00000504178 TSPY10P0CW01 314 aa9.64□□□□□ -0.87
SYNPO2-205ENST00000504178 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.64□□□□□ -0.87
SYNPO2-205ENST00000504178 MTUS2Q5JR59 1369 aa9.63□□□□□ -0.87
SYNPO2-205ENST00000504178 TMC1Q8TDI8 760 aa9.63□□□□□ -0.87
SYNPO2-205ENST00000504178 A0A0G2JS52 829 aa9.63□□□□□ -0.87
SYNPO2-205ENST00000504178 CCDC180Q9P1Z9 1646 aa9.63□□□□□ -0.87
SYNPO2-205ENST00000504178 SENP3Q9H4L4 574 aaPredicted RBP9.6□□□□□ -0.87
SYNPO2-205ENST00000504178 RB1CC1Q8TDY2 1594 aa9.59□□□□□ -0.87
SYNPO2-205ENST00000504178 DCAF1Q9Y4B6 1507 aa9.59□□□□□ -0.87
SYNPO2-205ENST00000504178 C14orf37Q86TY3 774 aa9.59□□□□□ -0.87
SYNPO2-205ENST00000504178 PPP1R15AO75807 674 aaPredicted RBP9.59□□□□□ -0.87
SYNPO2-205ENST00000504178 PLEKHG5O94827 1062 aa9.59□□□□□ -0.87
SYNPO2-205ENST00000504178 MYH16Q9H6N6 1097 aa9.58□□□□□ -0.88
SYNPO2-205ENST00000504178 KCNH8Q96L42 1107 aa9.57□□□□□ -0.88
SYNPO2-205ENST00000504178 CCDC136Q96JN2 1154 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms