RNA–Protein interactions for RNA: ENST00000492449.5

VPS8-225, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 1 (best)

Gene VPS8, Length 2,980 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-225ENST00000492449 NISCHQ9Y2I1 1504 aa17.33■□□□□ 0.37
VPS8-225ENST00000492449 PELP1Q8IZL8 1130 aaKnown RBP16.83■□□□□ 0.28
VPS8-225ENST00000492449 HRCP23327 699 aa16.62■□□□□ 0.25
VPS8-225ENST00000492449 MYT1Q01538 1121 aa16.38■□□□□ 0.21
VPS8-225ENST00000492449 PPARGC1BQ86YN6 1023 aaKnown RBP15.99■□□□□ 0.15
VPS8-225ENST00000492449 SCAF1Q9H7N4 1312 aaKnown RBP15.87■□□□□ 0.13
VPS8-225ENST00000492449 PCGF6Q9BYE7 350 aa15.84■□□□□ 0.13
VPS8-225ENST00000492449 MYO15BQ96JP2 1530 aa15.83■□□□□ 0.13
VPS8-225ENST00000492449 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
VPS8-225ENST00000492449 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
VPS8-225ENST00000492449 TTBK1Q5TCY1 1321 aaPredicted RBP15.59■□□□□ 0.09
VPS8-225ENST00000492449 ZEB1P37275 1124 aaPredicted RBP15.55■□□□□ 0.08
VPS8-225ENST00000492449 CHIC1Q5VXU3 224 aa15.47■□□□□ 0.07
VPS8-225ENST00000492449 TRIM26Q12899 539 aaPredicted RBP15.43■□□□□ 0.06
VPS8-225ENST00000492449 ACIN1Q9UKV3 1341 aaKnown RBP15.41■□□□□ 0.06
VPS8-225ENST00000492449 SUPT5HO00267 1087 aaKnown RBP15.33■□□□□ 0.04
VPS8-225ENST00000492449 NEUROD1Q13562 356 aa15.25■□□□□ 0.03
VPS8-225ENST00000492449 SHROOM4Q9ULL8 1493 aa15.21■□□□□ 0.03
VPS8-225ENST00000492449 GTF3C3Q9Y5Q9 886 aa15.19■□□□□ 0.02
VPS8-225ENST00000492449 CENPBP07199 599 aaPredicted RBP15.15■□□□□ 0.02
VPS8-225ENST00000492449 BCL11AQ9H165 835 aa15□□□□□ -0.01
VPS8-225ENST00000492449 LOC105371045A0A1W2PR82 267 aa14.97□□□□□ -0.01
VPS8-225ENST00000492449 ZCCHC6Q5VYS8 1495 aaKnown RBP14.87□□□□□ -0.03
VPS8-225ENST00000492449 DIEXFQ68CQ4 756 aaKnown RBP14.85□□□□□ -0.03
VPS8-225ENST00000492449 FAM9AQ8IZU1 332 aaPredicted RBP14.84□□□□□ -0.03
VPS8-225ENST00000492449 ANP32EQ9BTT0 268 aa14.79□□□□□ -0.04
VPS8-225ENST00000492449 PRKCSHP14314 528 aaPredicted RBP14.73□□□□□ -0.05
VPS8-225ENST00000492449 TRIM41Q8WV44 630 aa14.71□□□□□ -0.05
VPS8-225ENST00000492449 CLSPNQ9HAW4 1339 aa14.68□□□□□ -0.06
VPS8-225ENST00000492449 ERICH6Q7L0X2 663 aa14.57□□□□□ -0.08
VPS8-225ENST00000492449 CCER1Q8TC90 406 aaPredicted RBP14.55□□□□□ -0.08
VPS8-225ENST00000492449 CSRNP3Q8WYN3 585 aa14.53□□□□□ -0.08
VPS8-225ENST00000492449 ZNF316A6NFI3 1004 aaPredicted RBP14.52□□□□□ -0.09
VPS8-225ENST00000492449 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
VPS8-225ENST00000492449 TSHZ2Q9NRE2 1034 aa14.5□□□□□ -0.09
VPS8-225ENST00000492449 APLP2Q06481 763 aa14.44□□□□□ -0.1
VPS8-225ENST00000492449 SUPT16HQ9Y5B9 1047 aaKnown RBP14.44□□□□□ -0.1
VPS8-225ENST00000492449 YTHDC1Q96MU7 727 aaKnown RBP14.43□□□□□ -0.1
VPS8-225ENST00000492449 MIER1Q8N108 512 aa14.39□□□□□ -0.11
VPS8-225ENST00000492449 ABCC9O60706 1549 aa14.25□□□□□ -0.13
VPS8-225ENST00000492449 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.13
VPS8-225ENST00000492449 DCAF8L2P0C7V8 631 aa14.24□□□□□ -0.13
VPS8-225ENST00000492449 MYT1LQ9UL68 1186 aa14.14□□□□□ -0.15
VPS8-225ENST00000492449 RB1CC1Q8TDY2 1594 aa14.11□□□□□ -0.15
VPS8-225ENST00000492449 RBM19Q9Y4C8 960 aaKnown RBP14.1□□□□□ -0.15
VPS8-225ENST00000492449 RSF1Q96T23 1441 aaPredicted RBP14.03□□□□□ -0.16
VPS8-225ENST00000492449 MSH5O43196 834 aa14.01□□□□□ -0.17
VPS8-225ENST00000492449 FANCIQ9NVI1 1328 aa14.01□□□□□ -0.17
VPS8-225ENST00000492449 ERICH6BQ5W0A0 696 aa13.98□□□□□ -0.17
VPS8-225ENST00000492449 ANO8Q9HCE9 1232 aaPredicted RBP13.93□□□□□ -0.18
VPS8-225ENST00000492449 CEP162Q5TB80 1403 aa13.9□□□□□ -0.18
VPS8-225ENST00000492449 UBE2Q2Q8WVN8 375 aa13.89□□□□□ -0.19
VPS8-225ENST00000492449 DEKP35659 375 aaKnown RBP13.88□□□□□ -0.19
VPS8-225ENST00000492449 FKBP8Q14318 412 aa13.87□□□□□ -0.19
VPS8-225ENST00000492449 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
VPS8-225ENST00000492449 EIF4G1Q04637 1599 aaKnown RBP13.85□□□□□ -0.19
VPS8-225ENST00000492449 TNIKQ9UKE5 1360 aa13.84□□□□□ -0.19
VPS8-225ENST00000492449 BCANQ96GW7 911 aa13.83□□□□□ -0.2
VPS8-225ENST00000492449 NEFLP07196 543 aa13.77□□□□□ -0.21
VPS8-225ENST00000492449 SALL2Q9Y467 1007 aaPredicted RBP13.77□□□□□ -0.21
VPS8-225ENST00000492449 DHX57Q6P158 1386 aaKnown RBP13.69□□□□□ -0.22
VPS8-225ENST00000492449 EEA1Q15075 1411 aa13.68□□□□□ -0.22
VPS8-225ENST00000492449 CDK11AQ9UQ88 783 aaPredicted RBP13.67□□□□□ -0.22
VPS8-225ENST00000492449 KCNH8Q96L42 1107 aa13.66□□□□□ -0.22
VPS8-225ENST00000492449 ITGAEP38570 1179 aa13.65□□□□□ -0.22
VPS8-225ENST00000492449 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
VPS8-225ENST00000492449 NACADO15069 1562 aa13.61□□□□□ -0.23
VPS8-225ENST00000492449 SCRIBQ14160 1630 aa13.6□□□□□ -0.23
VPS8-225ENST00000492449 GOLGA3Q08378 1498 aa13.6□□□□□ -0.23
VPS8-225ENST00000492449 CCER2I3L3R5 266 aa13.59□□□□□ -0.23
VPS8-225ENST00000492449 ABCC8Q09428 1581 aa13.59□□□□□ -0.23
VPS8-225ENST00000492449 NOP58Q9Y2X3 529 aaKnown RBP13.57□□□□□ -0.24
VPS8-225ENST00000492449 CUX2O14529 1486 aa13.57□□□□□ -0.24
VPS8-225ENST00000492449 CCDC136Q96JN2 1154 aa13.57□□□□□ -0.24
VPS8-225ENST00000492449 BAZ1AQ9NRL2 1556 aaPredicted RBP13.56□□□□□ -0.24
VPS8-225ENST00000492449 CCDC88BA6NC98 1476 aa13.56□□□□□ -0.24
VPS8-225ENST00000492449 VPS8Q8N3P4 1428 aa13.54□□□□□ -0.24
VPS8-225ENST00000492449 IL27Q8NEV9 243 aa13.51□□□□□ -0.25
VPS8-225ENST00000492449 KIF21BO75037 1637 aa13.51□□□□□ -0.25
VPS8-225ENST00000492449 WIZO95785 1651 aa13.51□□□□□ -0.25
VPS8-225ENST00000492449 SOGA1O94964 1423 aa13.5□□□□□ -0.25
VPS8-225ENST00000492449 C11orf95C9JLR9 678 aaPredicted RBP13.5□□□□□ -0.25
VPS8-225ENST00000492449 MROH2BQ7Z745 1585 aa13.49□□□□□ -0.25
VPS8-225ENST00000492449 CLIP1P30622 1438 aa13.49□□□□□ -0.25
VPS8-225ENST00000492449 PPP1R15AO75807 674 aaPredicted RBP13.47□□□□□ -0.25
VPS8-225ENST00000492449 WASHC2AQ641Q2 1341 aa13.47□□□□□ -0.25
VPS8-225ENST00000492449 EIF5BO60841 1220 aaKnown RBP13.46□□□□□ -0.25
VPS8-225ENST00000492449 NBR1Q14596 966 aa13.46□□□□□ -0.26
VPS8-225ENST00000492449 PPP4R2Q9NY27 417 aa13.46□□□□□ -0.26
VPS8-225ENST00000492449 RTL5Q5HYW3 569 aaPredicted RBP13.45□□□□□ -0.26
VPS8-225ENST00000492449 PAK3O75914 559 aaPredicted RBP13.44□□□□□ -0.26
VPS8-225ENST00000492449 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.44□□□□□ -0.26
VPS8-225ENST00000492449 PKNOX2Q96KN3 472 aa13.43□□□□□ -0.26
VPS8-225ENST00000492449 CEP164Q9UPV0 1460 aa13.43□□□□□ -0.26
VPS8-225ENST00000492449 WASHC2CQ9Y4E1 1318 aa13.42□□□□□ -0.26
VPS8-225ENST00000492449 TRIM52Q96A61 297 aa13.42□□□□□ -0.26
VPS8-225ENST00000492449 BAZ1BQ9UIG0 1483 aaKnown RBP13.42□□□□□ -0.26
VPS8-225ENST00000492449 MAPKBP1O60336 1514 aa13.41□□□□□ -0.26
VPS8-225ENST00000492449 UBTFP17480 764 aaKnown RBP13.41□□□□□ -0.26
VPS8-225ENST00000492449 RRBP1Q9P2E9 1410 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms