RNA–Protein interactions for RNA: ENST00000490910.5

CRNKL1-204, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best)

Gene CRNKL1, Length 4,183 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-204ENST00000490910 NISCHQ9Y2I1 1504 aa19.26■□□□□ 0.67
CRNKL1-204ENST00000490910 PELP1Q8IZL8 1130 aaKnown RBP18.55■□□□□ 0.56
CRNKL1-204ENST00000490910 SUPT5HO00267 1087 aaKnown RBP18.51■□□□□ 0.55
CRNKL1-204ENST00000490910 PCGF6Q9BYE7 350 aa18.34■□□□□ 0.53
CRNKL1-204ENST00000490910 HRCP23327 699 aa18.3■□□□□ 0.52
CRNKL1-204ENST00000490910 SHROOM4Q9ULL8 1493 aa18.2■□□□□ 0.5
CRNKL1-204ENST00000490910 MYT1Q01538 1121 aa18.11■□□□□ 0.49
CRNKL1-204ENST00000490910 DCAF8L2P0C7V8 631 aa17.96■□□□□ 0.47
CRNKL1-204ENST00000490910 PPARGC1BQ86YN6 1023 aaKnown RBP17.87■□□□□ 0.45
CRNKL1-204ENST00000490910 ZEB1P37275 1124 aaPredicted RBP17.85■□□□□ 0.45
CRNKL1-204ENST00000490910 CENPBP07199 599 aaPredicted RBP17.69■□□□□ 0.42
CRNKL1-204ENST00000490910 TRIM26Q12899 539 aaPredicted RBP17.58■□□□□ 0.4
CRNKL1-204ENST00000490910 CHIC1Q5VXU3 224 aa17.49■□□□□ 0.39
CRNKL1-204ENST00000490910 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
CRNKL1-204ENST00000490910 CCER1Q8TC90 406 aaPredicted RBP17.32■□□□□ 0.36
CRNKL1-204ENST00000490910 LOC105371045A0A1W2PR82 267 aa17.29■□□□□ 0.36
CRNKL1-204ENST00000490910 FAM9AQ8IZU1 332 aaPredicted RBP17.28■□□□□ 0.36
CRNKL1-204ENST00000490910 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
CRNKL1-204ENST00000490910 YTHDC1Q96MU7 727 aaKnown RBP17.18■□□□□ 0.34
CRNKL1-204ENST00000490910 GTF3C3Q9Y5Q9 886 aa17.15■□□□□ 0.34
CRNKL1-204ENST00000490910 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
CRNKL1-204ENST00000490910 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
CRNKL1-204ENST00000490910 TTBK1Q5TCY1 1321 aaPredicted RBP17.03■□□□□ 0.32
CRNKL1-204ENST00000490910 DIEXFQ68CQ4 756 aaKnown RBP17.03■□□□□ 0.32
CRNKL1-204ENST00000490910 DCAF1Q9Y4B6 1507 aa16.97■□□□□ 0.31
CRNKL1-204ENST00000490910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
CRNKL1-204ENST00000490910 NEUROD1Q13562 356 aa16.87■□□□□ 0.29
CRNKL1-204ENST00000490910 MYO15BQ96JP2 1530 aa16.86■□□□□ 0.29
CRNKL1-204ENST00000490910 ERICH6Q7L0X2 663 aa16.84■□□□□ 0.29
CRNKL1-204ENST00000490910 APLP2Q06481 763 aa16.75■□□□□ 0.27
CRNKL1-204ENST00000490910 NEFLP07196 543 aa16.67■□□□□ 0.26
CRNKL1-204ENST00000490910 CCDC180Q9P1Z9 1646 aa16.61■□□□□ 0.25
CRNKL1-204ENST00000490910 ZNF316A6NFI3 1004 aaPredicted RBP16.59■□□□□ 0.25
CRNKL1-204ENST00000490910 UBTFP17480 764 aaKnown RBP16.5■□□□□ 0.23
CRNKL1-204ENST00000490910 HNRNPUL2Q1KMD3 747 aaKnown RBP16.42■□□□□ 0.22
CRNKL1-204ENST00000490910 CLSPNQ9HAW4 1339 aa16.39■□□□□ 0.21
CRNKL1-204ENST00000490910 BCANQ96GW7 911 aa16.34■□□□□ 0.21
CRNKL1-204ENST00000490910 RANGAP1P46060 587 aaPredicted RBP16.3■□□□□ 0.2
CRNKL1-204ENST00000490910 ANP32EQ9BTT0 268 aa16.3■□□□□ 0.2
CRNKL1-204ENST00000490910 MIER1Q8N108 512 aa16.26■□□□□ 0.19
CRNKL1-204ENST00000490910 BCL11AQ9H165 835 aa16.25■□□□□ 0.19
CRNKL1-204ENST00000490910 ZCCHC6Q5VYS8 1495 aaKnown RBP16.22■□□□□ 0.19
CRNKL1-204ENST00000490910 RTL5Q5HYW3 569 aaPredicted RBP16.08■□□□□ 0.16
CRNKL1-204ENST00000490910 FKBP8Q14318 412 aa16.08■□□□□ 0.16
CRNKL1-204ENST00000490910 CDK11AQ9UQ88 783 aaPredicted RBP16.07■□□□□ 0.16
CRNKL1-204ENST00000490910 SUPT16HQ9Y5B9 1047 aaKnown RBP16.03■□□□□ 0.16
CRNKL1-204ENST00000490910 ITGAEP38570 1179 aa16.01■□□□□ 0.15
CRNKL1-204ENST00000490910 MYT1LQ9UL68 1186 aa15.98■□□□□ 0.15
CRNKL1-204ENST00000490910 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
CRNKL1-204ENST00000490910 ANP32CO43423 234 aa15.9■□□□□ 0.14
CRNKL1-204ENST00000490910 TSHZ2Q9NRE2 1034 aa15.89■□□□□ 0.13
CRNKL1-204ENST00000490910 ATP1B4Q9UN42 357 aaPredicted RBP15.82■□□□□ 0.12
CRNKL1-204ENST00000490910 DAXXQ9UER7 740 aaPredicted RBP15.79■□□□□ 0.12
CRNKL1-204ENST00000490910 TRIM52Q96A61 297 aa15.75■□□□□ 0.11
CRNKL1-204ENST00000490910 DDX10Q13206 875 aaKnown RBP15.74■□□□□ 0.11
CRNKL1-204ENST00000490910 RBM19Q9Y4C8 960 aaKnown RBP15.74■□□□□ 0.11
CRNKL1-204ENST00000490910 ANP32AP39687 249 aaKnown RBP15.72■□□□□ 0.11
CRNKL1-204ENST00000490910 NBR1Q14596 966 aa15.72■□□□□ 0.11
CRNKL1-204ENST00000490910 CEP162Q5TB80 1403 aa15.69■□□□□ 0.1
CRNKL1-204ENST00000490910 RSF1Q96T23 1441 aaPredicted RBP15.67■□□□□ 0.1
CRNKL1-204ENST00000490910 EIF5BO60841 1220 aaKnown RBP15.65■□□□□ 0.1
CRNKL1-204ENST00000490910 HNRNPUQ00839 825 aaKnown RBP eCLIP15.65■□□□□ 0.1
CRNKL1-204ENST00000490910 IRX6P78412 446 aaPredicted RBP15.6■□□□□ 0.09
CRNKL1-204ENST00000490910 FAM50AQ14320 339 aaKnown RBP15.59■□□□□ 0.09
CRNKL1-204ENST00000490910 DEKP35659 375 aaKnown RBP15.59■□□□□ 0.09
CRNKL1-204ENST00000490910 CNGB1Q14028 1251 aaPredicted RBP15.58■□□□□ 0.09
CRNKL1-204ENST00000490910 ZBTB47Q9UFB7 747 aaPredicted RBP15.56■□□□□ 0.08
CRNKL1-204ENST00000490910 POLR3GLQ9BT43 218 aa15.55■□□□□ 0.08
CRNKL1-204ENST00000490910 TNIKQ9UKE5 1360 aa15.55■□□□□ 0.08
CRNKL1-204ENST00000490910 NPM2Q86SE8 214 aaKnown RBP15.51■□□□□ 0.07
CRNKL1-204ENST00000490910 SCRIBQ14160 1630 aa15.48■□□□□ 0.07
CRNKL1-204ENST00000490910 RB1CC1Q8TDY2 1594 aa15.48■□□□□ 0.07
CRNKL1-204ENST00000490910 CLIP1P30622 1438 aa15.47■□□□□ 0.07
CRNKL1-204ENST00000490910 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
CRNKL1-204ENST00000490910 EEA1Q15075 1411 aa15.44■□□□□ 0.06
CRNKL1-204ENST00000490910 HIRIP3Q9BW71 556 aaPredicted RBP15.44■□□□□ 0.06
CRNKL1-204ENST00000490910 GOLGA3Q08378 1498 aa15.43■□□□□ 0.06
CRNKL1-204ENST00000490910 CCDC136Q96JN2 1154 aa15.43■□□□□ 0.06
CRNKL1-204ENST00000490910 RTN4Q9NQC3 1192 aaKnown RBP15.43■□□□□ 0.06
CRNKL1-204ENST00000490910 PPP4R2Q9NY27 417 aa15.41■□□□□ 0.06
CRNKL1-204ENST00000490910 FAM9BQ8IZU0 186 aa15.4■□□□□ 0.06
CRNKL1-204ENST00000490910 WRNQ14191 1432 aaPredicted RBP eCLIP15.4■□□□□ 0.06
CRNKL1-204ENST00000490910 GLIPR1L2Q4G1C9 344 aa15.39■□□□□ 0.05
CRNKL1-204ENST00000490910 TONSLQ96HA7 1378 aa15.39■□□□□ 0.05
CRNKL1-204ENST00000490910 PRKCSHP14314 528 aaPredicted RBP15.39■□□□□ 0.05
CRNKL1-204ENST00000490910 ABCC9O60706 1549 aa15.37■□□□□ 0.05
CRNKL1-204ENST00000490910 CCER2I3L3R5 266 aa15.35■□□□□ 0.05
CRNKL1-204ENST00000490910 FANCIQ9NVI1 1328 aa15.34■□□□□ 0.05
CRNKL1-204ENST00000490910 KCNH8Q96L42 1107 aa15.33■□□□□ 0.05
CRNKL1-204ENST00000490910 ERICH6BQ5W0A0 696 aa15.32■□□□□ 0.04
CRNKL1-204ENST00000490910 B4GALNT3Q6L9W6 998 aa15.3■□□□□ 0.04
CRNKL1-204ENST00000490910 MRS2Q9HD23 443 aa15.3■□□□□ 0.04
CRNKL1-204ENST00000490910 NEFMP07197 916 aa15.26■□□□□ 0.03
CRNKL1-204ENST00000490910 SOGA1O94964 1423 aa15.26■□□□□ 0.03
CRNKL1-204ENST00000490910 CEP164Q9UPV0 1460 aa15.24■□□□□ 0.03
CRNKL1-204ENST00000490910 PPM1GO15355 546 aaPredicted RBP15.24■□□□□ 0.03
CRNKL1-204ENST00000490910 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.23■□□□□ 0.03
CRNKL1-204ENST00000490910 LAS1LQ9Y4W2 734 aaKnown RBP15.22■□□□□ 0.03
CRNKL1-204ENST00000490910 SIN3AQ96ST3 1273 aa15.21■□□□□ 0.03
CRNKL1-204ENST00000490910 VPS8Q8N3P4 1428 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms