RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 NISCHQ9Y2I1 1504 aa22.53■■□□□ 1.2
SHOX2-205ENST00000490689 SUPT5HO00267 1087 aaKnown RBP21.74■■□□□ 1.07
SHOX2-205ENST00000490689 DCAF8L2P0C7V8 631 aa21.56■■□□□ 1.04
SHOX2-205ENST00000490689 SHROOM4Q9ULL8 1493 aa21.54■■□□□ 1.04
SHOX2-205ENST00000490689 PCGF6Q9BYE7 350 aa21.09■□□□□ 0.97
SHOX2-205ENST00000490689 EHMT2Q96KQ7 1210 aa20.76■□□□□ 0.91
SHOX2-205ENST00000490689 HRCP23327 699 aa20.65■□□□□ 0.9
SHOX2-205ENST00000490689 PPARGC1BQ86YN6 1023 aaKnown RBP20.56■□□□□ 0.88
SHOX2-205ENST00000490689 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
SHOX2-205ENST00000490689 CHIC1Q5VXU3 224 aa20.25■□□□□ 0.83
SHOX2-205ENST00000490689 LOC105371045A0A1W2PR82 267 aa20.23■□□□□ 0.83
SHOX2-205ENST00000490689 TTBK1Q5TCY1 1321 aaPredicted RBP20.13■□□□□ 0.81
SHOX2-205ENST00000490689 PELP1Q8IZL8 1130 aaKnown RBP20.12■□□□□ 0.81
SHOX2-205ENST00000490689 TRIM26Q12899 539 aaPredicted RBP20.02■□□□□ 0.8
SHOX2-205ENST00000490689 ZEB1P37275 1124 aaPredicted RBP20.02■□□□□ 0.8
SHOX2-205ENST00000490689 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
SHOX2-205ENST00000490689 CCER1Q8TC90 406 aaPredicted RBP19.91■□□□□ 0.78
SHOX2-205ENST00000490689 CENPBP07199 599 aaPredicted RBP19.83■□□□□ 0.77
SHOX2-205ENST00000490689 YTHDC1Q96MU7 727 aaKnown RBP19.76■□□□□ 0.75
SHOX2-205ENST00000490689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.56■□□□□ 0.72
SHOX2-205ENST00000490689 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
SHOX2-205ENST00000490689 RANGAP1P46060 587 aaPredicted RBP19.44■□□□□ 0.7
SHOX2-205ENST00000490689 GTF3C3Q9Y5Q9 886 aa19.41■□□□□ 0.7
SHOX2-205ENST00000490689 MYT1Q01538 1121 aa19.41■□□□□ 0.7
SHOX2-205ENST00000490689 APLP2Q06481 763 aa19.39■□□□□ 0.69
SHOX2-205ENST00000490689 DIEXFQ68CQ4 756 aaKnown RBP19.38■□□□□ 0.69
SHOX2-205ENST00000490689 SCAF1Q9H7N4 1312 aaKnown RBP19.37■□□□□ 0.69
SHOX2-205ENST00000490689 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
SHOX2-205ENST00000490689 ACIN1Q9UKV3 1341 aaKnown RBP19.25■□□□□ 0.67
SHOX2-205ENST00000490689 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
SHOX2-205ENST00000490689 NEUROD1Q13562 356 aa19.16■□□□□ 0.66
SHOX2-205ENST00000490689 HNRNPUL2Q1KMD3 747 aaKnown RBP19.16■□□□□ 0.66
SHOX2-205ENST00000490689 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
SHOX2-205ENST00000490689 ZNF316A6NFI3 1004 aaPredicted RBP18.87■□□□□ 0.61
SHOX2-205ENST00000490689 ERICH6Q7L0X2 663 aa18.87■□□□□ 0.61
SHOX2-205ENST00000490689 ITGAEP38570 1179 aa18.85■□□□□ 0.61
SHOX2-205ENST00000490689 NEFLP07196 543 aa18.83■□□□□ 0.6
SHOX2-205ENST00000490689 BCANQ96GW7 911 aa18.78■□□□□ 0.6
SHOX2-205ENST00000490689 ATP1B4Q9UN42 357 aaPredicted RBP18.75■□□□□ 0.59
SHOX2-205ENST00000490689 CCDC180Q9P1Z9 1646 aa18.66■□□□□ 0.58
SHOX2-205ENST00000490689 MIER1Q8N108 512 aa18.64■□□□□ 0.57
SHOX2-205ENST00000490689 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
SHOX2-205ENST00000490689 CNGB1Q14028 1251 aaPredicted RBP18.41■□□□□ 0.54
SHOX2-205ENST00000490689 FKBP8Q14318 412 aa18.33■□□□□ 0.52
SHOX2-205ENST00000490689 RSF1Q96T23 1441 aaPredicted RBP18.33■□□□□ 0.52
SHOX2-205ENST00000490689 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
SHOX2-205ENST00000490689 FAM50AQ14320 339 aaKnown RBP18.25■□□□□ 0.51
SHOX2-205ENST00000490689 ABCC9O60706 1549 aa18.25■□□□□ 0.51
SHOX2-205ENST00000490689 POLR3GLQ9BT43 218 aa18.22■□□□□ 0.51
SHOX2-205ENST00000490689 DDX10Q13206 875 aaKnown RBP18.2■□□□□ 0.5
SHOX2-205ENST00000490689 PABPN1Q86U42 306 aaKnown RBP eCLIP18.19■□□□□ 0.5
SHOX2-205ENST00000490689 TRIM52Q96A61 297 aa18.17■□□□□ 0.5
SHOX2-205ENST00000490689 ANP32CO43423 234 aa18.16■□□□□ 0.5
SHOX2-205ENST00000490689 CEP162Q5TB80 1403 aa18.15■□□□□ 0.5
SHOX2-205ENST00000490689 SUPT16HQ9Y5B9 1047 aaKnown RBP18.14■□□□□ 0.49
SHOX2-205ENST00000490689 HIRIP3Q9BW71 556 aaPredicted RBP18.12■□□□□ 0.49
SHOX2-205ENST00000490689 CDK11AQ9UQ88 783 aaPredicted RBP18.12■□□□□ 0.49
SHOX2-205ENST00000490689 ANP32EQ9BTT0 268 aa18.1■□□□□ 0.49
SHOX2-205ENST00000490689 CLSPNQ9HAW4 1339 aa18.08■□□□□ 0.49
SHOX2-205ENST00000490689 IRX6P78412 446 aaPredicted RBP18.04■□□□□ 0.48
SHOX2-205ENST00000490689 RB1CC1Q8TDY2 1594 aa18.01■□□□□ 0.47
SHOX2-205ENST00000490689 RTL5Q5HYW3 569 aaPredicted RBP18■□□□□ 0.47
SHOX2-205ENST00000490689 P3H3Q8IVL6 736 aa17.98■□□□□ 0.47
SHOX2-205ENST00000490689 HNRNPUQ00839 825 aaKnown RBP eCLIP17.96■□□□□ 0.47
SHOX2-205ENST00000490689 CLIP1P30622 1438 aa17.94■□□□□ 0.46
SHOX2-205ENST00000490689 BCL11AQ9H165 835 aa17.94■□□□□ 0.46
SHOX2-205ENST00000490689 CECR2Q9BXF3 1484 aa17.92■□□□□ 0.46
SHOX2-205ENST00000490689 TSHZ2Q9NRE2 1034 aa17.91■□□□□ 0.46
SHOX2-205ENST00000490689 TNIKQ9UKE5 1360 aa17.9■□□□□ 0.46
SHOX2-205ENST00000490689 SOGA1O94964 1423 aa17.89■□□□□ 0.46
SHOX2-205ENST00000490689 NBR1Q14596 966 aa17.86■□□□□ 0.45
SHOX2-205ENST00000490689 DAXXQ9UER7 740 aaPredicted RBP17.83■□□□□ 0.45
SHOX2-205ENST00000490689 FAM9BQ8IZU0 186 aa17.81■□□□□ 0.44
SHOX2-205ENST00000490689 KCNH8Q96L42 1107 aa17.8■□□□□ 0.44
SHOX2-205ENST00000490689 GOLGA3Q08378 1498 aa17.79■□□□□ 0.44
SHOX2-205ENST00000490689 ZNF326Q5BKZ1 582 aaKnown RBP17.78■□□□□ 0.44
SHOX2-205ENST00000490689 NPM2Q86SE8 214 aaKnown RBP17.77■□□□□ 0.44
SHOX2-205ENST00000490689 SIN3AQ96ST3 1273 aa17.77■□□□□ 0.43
SHOX2-205ENST00000490689 RBM19Q9Y4C8 960 aaKnown RBP17.77■□□□□ 0.43
SHOX2-205ENST00000490689 CCDC88BA6NC98 1476 aa17.76■□□□□ 0.43
SHOX2-205ENST00000490689 ABCC8Q09428 1581 aa17.73■□□□□ 0.43
SHOX2-205ENST00000490689 SENP3-EIF4A1A0A087X0R7 540 aa17.73■□□□□ 0.43
SHOX2-205ENST00000490689 TONSLQ96HA7 1378 aa17.73■□□□□ 0.43
SHOX2-205ENST00000490689 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
SHOX2-205ENST00000490689 ANP32AP39687 249 aaKnown RBP17.69■□□□□ 0.42
SHOX2-205ENST00000490689 ARID3CA6NKF2 412 aa17.67■□□□□ 0.42
SHOX2-205ENST00000490689 EEA1Q15075 1411 aa17.67■□□□□ 0.42
SHOX2-205ENST00000490689 KANK4Q5T7N3 995 aaPredicted RBP17.64■□□□□ 0.41
SHOX2-205ENST00000490689 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.41
SHOX2-205ENST00000490689 MRS2Q9HD23 443 aa17.6■□□□□ 0.41
SHOX2-205ENST00000490689 SALL2Q9Y467 1007 aaPredicted RBP17.6■□□□□ 0.41
SHOX2-205ENST00000490689 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.41
SHOX2-205ENST00000490689 CHIC2Q9UKJ5 165 aa17.58■□□□□ 0.41
SHOX2-205ENST00000490689 NACADO15069 1562 aa17.58■□□□□ 0.4
SHOX2-205ENST00000490689 CEP164Q9UPV0 1460 aa17.58■□□□□ 0.4
SHOX2-205ENST00000490689 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
SHOX2-205ENST00000490689 B4GALNT3Q6L9W6 998 aa17.55■□□□□ 0.4
SHOX2-205ENST00000490689 EIF5BO60841 1220 aaKnown RBP17.54■□□□□ 0.4
SHOX2-205ENST00000490689 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
SHOX2-205ENST00000490689 VPS8Q8N3P4 1428 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 160.5 ms