RNA–Protein interactions for RNA: ENST00000490638.5

ARHGEF39-205, Transcript of Rho guanine nucleotide exchange factor 39, humanhuman

TSL 1 (best)

Gene ARHGEF39, Length 4,498 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39-205ENST00000490638 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.85
ARHGEF39-205ENST00000490638 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
ARHGEF39-205ENST00000490638 SUPT5HO00267 1087 aaKnown RBP24.66■■□□□ 1.54
ARHGEF39-205ENST00000490638 SHROOM4Q9ULL8 1493 aa24.66■■□□□ 1.54
ARHGEF39-205ENST00000490638 EHMT2Q96KQ7 1210 aa23.54■■□□□ 1.36
ARHGEF39-205ENST00000490638 ABCC9O60706 1549 aa23.32■■□□□ 1.32
ARHGEF39-205ENST00000490638 FAM9AQ8IZU1 332 aaPredicted RBP23.18■■□□□ 1.3
ARHGEF39-205ENST00000490638 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
ARHGEF39-205ENST00000490638 APLP2Q06481 763 aa22.92■■□□□ 1.26
ARHGEF39-205ENST00000490638 TRIM41Q8WV44 630 aa22.91■■□□□ 1.26
ARHGEF39-205ENST00000490638 RANGAP1P46060 587 aaPredicted RBP22.78■■□□□ 1.24
ARHGEF39-205ENST00000490638 UBTFP17480 764 aaKnown RBP22.56■■□□□ 1.2
ARHGEF39-205ENST00000490638 TTBK1Q5TCY1 1321 aaPredicted RBP22.56■■□□□ 1.2
ARHGEF39-205ENST00000490638 ATP1B4Q9UN42 357 aaPredicted RBP22.55■■□□□ 1.2
ARHGEF39-205ENST00000490638 CCDC180Q9P1Z9 1646 aa22.08■■□□□ 1.13
ARHGEF39-205ENST00000490638 PCGF6Q9BYE7 350 aa22.03■■□□□ 1.12
ARHGEF39-205ENST00000490638 CHIC1Q5VXU3 224 aa22.02■■□□□ 1.12
ARHGEF39-205ENST00000490638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22■■□□□ 1.11
ARHGEF39-205ENST00000490638 HNRNPUL2Q1KMD3 747 aaKnown RBP22■■□□□ 1.11
ARHGEF39-205ENST00000490638 SCRIBQ14160 1630 aa21.99■■□□□ 1.11
ARHGEF39-205ENST00000490638 ZCCHC6Q5VYS8 1495 aaKnown RBP21.99■■□□□ 1.11
ARHGEF39-205ENST00000490638 PPARGC1BQ86YN6 1023 aaKnown RBP21.88■■□□□ 1.09
ARHGEF39-205ENST00000490638 LOC105371045A0A1W2PR82 267 aa21.83■■□□□ 1.09
ARHGEF39-205ENST00000490638 MYT1LQ9UL68 1186 aa21.77■■□□□ 1.08
ARHGEF39-205ENST00000490638 FBLN2P98095 1184 aa21.76■■□□□ 1.07
ARHGEF39-205ENST00000490638 RB1CC1Q8TDY2 1594 aa21.73■■□□□ 1.07
ARHGEF39-205ENST00000490638 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
ARHGEF39-205ENST00000490638 ITGAEP38570 1179 aa21.63■■□□□ 1.05
ARHGEF39-205ENST00000490638 NACADO15069 1562 aa21.54■■□□□ 1.04
ARHGEF39-205ENST00000490638 ZEB1P37275 1124 aaPredicted RBP21.35■■□□□ 1.01
ARHGEF39-205ENST00000490638 CSRNP3Q8WYN3 585 aa21.34■■□□□ 1.01
ARHGEF39-205ENST00000490638 TRIM26Q12899 539 aaPredicted RBP21.33■■□□□ 1.01
ARHGEF39-205ENST00000490638 P3H3Q8IVL6 736 aa21.29■■□□□ 1
ARHGEF39-205ENST00000490638 FAM50AQ14320 339 aaKnown RBP21.21■□□□□ 0.99
ARHGEF39-205ENST00000490638 ARID3CA6NKF2 412 aa21.21■□□□□ 0.99
ARHGEF39-205ENST00000490638 RSF1Q96T23 1441 aaPredicted RBP21.13■□□□□ 0.97
ARHGEF39-205ENST00000490638 DCAF1Q9Y4B6 1507 aa21.11■□□□□ 0.97
ARHGEF39-205ENST00000490638 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.97
ARHGEF39-205ENST00000490638 CHMP7Q8WUX9 453 aaPredicted RBP21.02■□□□□ 0.96
ARHGEF39-205ENST00000490638 POLR3GLQ9BT43 218 aa20.99■□□□□ 0.95
ARHGEF39-205ENST00000490638 TRIM52Q96A61 297 aa20.99■□□□□ 0.95
ARHGEF39-205ENST00000490638 CECR2Q9BXF3 1484 aa20.98■□□□□ 0.95
ARHGEF39-205ENST00000490638 NPM1P06748 294 aaKnown RBP eCLIP20.98■□□□□ 0.95
ARHGEF39-205ENST00000490638 CDK11AQ9UQ88 783 aaPredicted RBP20.96■□□□□ 0.95
ARHGEF39-205ENST00000490638 BAZ1AQ9NRL2 1556 aaPredicted RBP20.91■□□□□ 0.94
ARHGEF39-205ENST00000490638 ZNF777Q9ULD5 760 aaPredicted RBP20.9■□□□□ 0.94
ARHGEF39-205ENST00000490638 PELP1Q8IZL8 1130 aaKnown RBP20.89■□□□□ 0.93
ARHGEF39-205ENST00000490638 ERCC6Q03468 1493 aa20.85■□□□□ 0.93
ARHGEF39-205ENST00000490638 CNGB1Q14028 1251 aaPredicted RBP20.76■□□□□ 0.91
ARHGEF39-205ENST00000490638 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
ARHGEF39-205ENST00000490638 SLC4A1APQ9BWU0 796 aaKnown RBP20.72■□□□□ 0.91
ARHGEF39-205ENST00000490638 NEUROD1Q13562 356 aa20.71■□□□□ 0.91
ARHGEF39-205ENST00000490638 CENPBP07199 599 aaPredicted RBP20.71■□□□□ 0.91
ARHGEF39-205ENST00000490638 MYO15BQ96JP2 1530 aa20.7■□□□□ 0.9
ARHGEF39-205ENST00000490638 ZNF326Q5BKZ1 582 aaKnown RBP20.64■□□□□ 0.9
ARHGEF39-205ENST00000490638 ESF1Q9H501 851 aaKnown RBP20.64■□□□□ 0.89
ARHGEF39-205ENST00000490638 YTHDC1Q96MU7 727 aaKnown RBP20.63■□□□□ 0.89
ARHGEF39-205ENST00000490638 MROH2BQ7Z745 1585 aa20.63■□□□□ 0.89
ARHGEF39-205ENST00000490638 HRCP23327 699 aa20.6■□□□□ 0.89
ARHGEF39-205ENST00000490638 KIF27Q86VH2 1401 aa20.57■□□□□ 0.88
ARHGEF39-205ENST00000490638 BCANQ96GW7 911 aa20.56■□□□□ 0.88
ARHGEF39-205ENST00000490638 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
ARHGEF39-205ENST00000490638 KCNH8Q96L42 1107 aa20.54■□□□□ 0.88
ARHGEF39-205ENST00000490638 PLPPR3Q6T4P5 718 aa20.53■□□□□ 0.88
ARHGEF39-205ENST00000490638 PDS5BQ9NTI5 1447 aa20.51■□□□□ 0.87
ARHGEF39-205ENST00000490638 MTUS2Q5JR59 1369 aa20.5■□□□□ 0.87
ARHGEF39-205ENST00000490638 EEA1Q15075 1411 aa20.49■□□□□ 0.87
ARHGEF39-205ENST00000490638 CLIP1P30622 1438 aa20.47■□□□□ 0.87
ARHGEF39-205ENST00000490638 TSPY4P0CV99 314 aa20.47■□□□□ 0.87
ARHGEF39-205ENST00000490638 TSPY10P0CW01 314 aa20.47■□□□□ 0.87
ARHGEF39-205ENST00000490638 PLEKHD1A6NEE1 506 aa20.46■□□□□ 0.87
ARHGEF39-205ENST00000490638 CHIC2Q9UKJ5 165 aa20.45■□□□□ 0.86
ARHGEF39-205ENST00000490638 NEFLP07196 543 aa20.45■□□□□ 0.86
ARHGEF39-205ENST00000490638 CCDC88BA6NC98 1476 aa20.44■□□□□ 0.86
ARHGEF39-205ENST00000490638 CHGAP10645 457 aaKnown RBP20.41■□□□□ 0.86
ARHGEF39-205ENST00000490638 STAG3Q9UJ98 1225 aa20.39■□□□□ 0.86
ARHGEF39-205ENST00000490638 CADPSQ9ULU8 1353 aa20.38■□□□□ 0.85
ARHGEF39-205ENST00000490638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.38■□□□□ 0.856e-6■□□□□ 11
ARHGEF39-205ENST00000490638 ATAD2BQ9ULI0 1458 aa20.38■□□□□ 0.85
ARHGEF39-205ENST00000490638 CUX2O14529 1486 aa20.37■□□□□ 0.85
ARHGEF39-205ENST00000490638 GOLGA3Q08378 1498 aa20.35■□□□□ 0.85
ARHGEF39-205ENST00000490638 TDRD9Q8NDG6 1382 aaKnown RBP20.33■□□□□ 0.85
ARHGEF39-205ENST00000490638 CARMIL1Q5VZK9 1371 aa20.32■□□□□ 0.84
ARHGEF39-205ENST00000490638 SOGA1O94964 1423 aa20.28■□□□□ 0.84
ARHGEF39-205ENST00000490638 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
ARHGEF39-205ENST00000490638 WIZO95785 1651 aa20.24■□□□□ 0.83
ARHGEF39-205ENST00000490638 CEP162Q5TB80 1403 aa20.23■□□□□ 0.83
ARHGEF39-205ENST00000490638 CFDP1Q9UEE9 299 aaPredicted RBP20.21■□□□□ 0.83
ARHGEF39-205ENST00000490638 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
ARHGEF39-205ENST00000490638 TOP2AP11388 1531 aaKnown RBP20.18■□□□□ 0.82
ARHGEF39-205ENST00000490638 TNIKQ9UKE5 1360 aa20.17■□□□□ 0.82
ARHGEF39-205ENST00000490638 DIEXFQ68CQ4 756 aaKnown RBP20.17■□□□□ 0.82
ARHGEF39-205ENST00000490638 SMARCA4P51532 1647 aa20.16■□□□□ 0.82
ARHGEF39-205ENST00000490638 RRP7BPQ9NSQ0 103 aa20.16■□□□□ 0.82
ARHGEF39-205ENST00000490638 ABCC8Q09428 1581 aa20.13■□□□□ 0.81
ARHGEF39-205ENST00000490638 ARID4BQ4LE39 1312 aaPredicted RBP20.13■□□□□ 0.81
ARHGEF39-205ENST00000490638 EIF4G1Q04637 1599 aaKnown RBP20.13■□□□□ 0.81
ARHGEF39-205ENST00000490638 TONSLQ96HA7 1378 aa20.11■□□□□ 0.81
ARHGEF39-205ENST00000490638 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
ARHGEF39-205ENST00000490638 ANP32CO43423 234 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms