RNA–Protein interactions for RNA: ENST00000482657.1

LCNL1-204, Transcript of lipocalin like 1, humanhuman

TSL 2

Gene LCNL1, Length 3,706 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCNL1-204ENST00000482657 NISCHQ9Y2I1 1504 aa29.59■■■□□ 2.33
LCNL1-204ENST00000482657 SHROOM4Q9ULL8 1493 aa26.87■■□□□ 1.89
LCNL1-204ENST00000482657 DCAF8L2P0C7V8 631 aa26.72■■□□□ 1.87
LCNL1-204ENST00000482657 SUPT5HO00267 1087 aaKnown RBP26.62■■□□□ 1.85
LCNL1-204ENST00000482657 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
LCNL1-204ENST00000482657 CHIC1Q5VXU3 224 aa25.12■■□□□ 1.61
LCNL1-204ENST00000482657 EHMT2Q96KQ7 1210 aa25.11■■□□□ 1.61
LCNL1-204ENST00000482657 HRCP23327 699 aa25.09■■□□□ 1.61
LCNL1-204ENST00000482657 PPARGC1BQ86YN6 1023 aaKnown RBP24.95■■□□□ 1.58
LCNL1-204ENST00000482657 LOC105371045A0A1W2PR82 267 aa24.87■■□□□ 1.57
LCNL1-204ENST00000482657 ZCCHC6Q5VYS8 1495 aaKnown RBP24.86■■□□□ 1.57
LCNL1-204ENST00000482657 FAM9AQ8IZU1 332 aaPredicted RBP24.84■■□□□ 1.57
LCNL1-204ENST00000482657 MYO15BQ96JP2 1530 aa24.6■■□□□ 1.53
LCNL1-204ENST00000482657 TRIM41Q8WV44 630 aa24.48■■□□□ 1.51
LCNL1-204ENST00000482657 CCDC180Q9P1Z9 1646 aa24.45■■□□□ 1.5
LCNL1-204ENST00000482657 TRIM26Q12899 539 aaPredicted RBP24.26■■□□□ 1.47
LCNL1-204ENST00000482657 TTBK1Q5TCY1 1321 aaPredicted RBP24.24■■□□□ 1.47
LCNL1-204ENST00000482657 ABCC9O60706 1549 aa24.03■■□□□ 1.44
LCNL1-204ENST00000482657 ZEB1P37275 1124 aaPredicted RBP23.97■■□□□ 1.43
LCNL1-204ENST00000482657 SCRIBQ14160 1630 aa23.96■■□□□ 1.43
LCNL1-204ENST00000482657 DCAF1Q9Y4B6 1507 aa23.83■■□□□ 1.41
LCNL1-204ENST00000482657 CCER1Q8TC90 406 aaPredicted RBP23.74■■□□□ 1.39
LCNL1-204ENST00000482657 RSF1Q96T23 1441 aaPredicted RBP23.72■■□□□ 1.39
LCNL1-204ENST00000482657 PELP1Q8IZL8 1130 aaKnown RBP23.7■■□□□ 1.39
LCNL1-204ENST00000482657 RANGAP1P46060 587 aaPredicted RBP23.69■■□□□ 1.38
LCNL1-204ENST00000482657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.62■■□□□ 1.37
LCNL1-204ENST00000482657 UBTFP17480 764 aaKnown RBP23.6■■□□□ 1.37
LCNL1-204ENST00000482657 SCAF1Q9H7N4 1312 aaKnown RBP23.53■■□□□ 1.36
LCNL1-204ENST00000482657 PABPN1Q86U42 306 aaKnown RBP eCLIP23.49■■□□□ 1.35
LCNL1-204ENST00000482657 CECR2Q9BXF3 1484 aa23.45■■□□□ 1.35
LCNL1-204ENST00000482657 RB1CC1Q8TDY2 1594 aa23.41■■□□□ 1.34
LCNL1-204ENST00000482657 CENPBP07199 599 aaPredicted RBP23.4■■□□□ 1.34
LCNL1-204ENST00000482657 YTHDC1Q96MU7 727 aaKnown RBP23.38■■□□□ 1.33
LCNL1-204ENST00000482657 DIEXFQ68CQ4 756 aaKnown RBP23.28■■□□□ 1.32
LCNL1-204ENST00000482657 APLP2Q06481 763 aa23.25■■□□□ 1.31
LCNL1-204ENST00000482657 GTF3C3Q9Y5Q9 886 aa23.24■■□□□ 1.31
LCNL1-204ENST00000482657 HNRNPUL2Q1KMD3 747 aaKnown RBP23.2■■□□□ 1.31
LCNL1-204ENST00000482657 NEUROD1Q13562 356 aa23.2■■□□□ 1.3
LCNL1-204ENST00000482657 MROH2BQ7Z745 1585 aa23.2■■□□□ 1.3
LCNL1-204ENST00000482657 ACIN1Q9UKV3 1341 aaKnown RBP23.2■■□□□ 1.3
LCNL1-204ENST00000482657 CSRNP3Q8WYN3 585 aa23.03■■□□□ 1.28
LCNL1-204ENST00000482657 NACADO15069 1562 aa23.01■■□□□ 1.27
LCNL1-204ENST00000482657 WIZO95785 1651 aa23.01■■□□□ 1.27
LCNL1-204ENST00000482657 ABCC8Q09428 1581 aa22.87■■□□□ 1.25
LCNL1-204ENST00000482657 ITGAEP38570 1179 aa22.83■■□□□ 1.25
LCNL1-204ENST00000482657 SOGA1O94964 1423 aa22.83■■□□□ 1.24
LCNL1-204ENST00000482657 CCDC88BA6NC98 1476 aa22.81■■□□□ 1.24
LCNL1-204ENST00000482657 ZNF316A6NFI3 1004 aaPredicted RBP22.78■■□□□ 1.24
LCNL1-204ENST00000482657 CEP162Q5TB80 1403 aa22.78■■□□□ 1.24
LCNL1-204ENST00000482657 ATP1B4Q9UN42 357 aaPredicted RBP22.77■■□□□ 1.24
LCNL1-204ENST00000482657 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
LCNL1-204ENST00000482657 MYT1Q01538 1121 aa22.65■■□□□ 1.22
LCNL1-204ENST00000482657 RUSC2Q8N2Y8 1516 aa22.62■■□□□ 1.21
LCNL1-204ENST00000482657 MIER1Q8N108 512 aa22.6■■□□□ 1.21
LCNL1-204ENST00000482657 TNIKQ9UKE5 1360 aa22.54■■□□□ 1.2
LCNL1-204ENST00000482657 WRNQ14191 1432 aaPredicted RBP eCLIP22.54■■□□□ 1.2
LCNL1-204ENST00000482657 CLIP1P30622 1438 aa22.46■■□□□ 1.19
LCNL1-204ENST00000482657 TOP2AP11388 1531 aaKnown RBP22.46■■□□□ 1.19
LCNL1-204ENST00000482657 GOLGA3Q08378 1498 aa22.44■■□□□ 1.18
LCNL1-204ENST00000482657 SMARCA4P51532 1647 aa22.41■■□□□ 1.18
LCNL1-204ENST00000482657 P3H3Q8IVL6 736 aa22.36■■□□□ 1.17
LCNL1-204ENST00000482657 EEA1Q15075 1411 aa22.35■■□□□ 1.17
LCNL1-204ENST00000482657 SMARCA2P51531 1590 aa22.35■■□□□ 1.17
LCNL1-204ENST00000482657 BAZ1BQ9UIG0 1483 aaKnown RBP22.29■■□□□ 1.16
LCNL1-204ENST00000482657 FAM50AQ14320 339 aaKnown RBP22.28■■□□□ 1.16
LCNL1-204ENST00000482657 BCANQ96GW7 911 aa22.26■■□□□ 1.15
LCNL1-204ENST00000482657 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
LCNL1-204ENST00000482657 KANK4Q5T7N3 995 aaPredicted RBP22.16■■□□□ 1.14
LCNL1-204ENST00000482657 RAPGEF2Q9Y4G8 1499 aa22.15■■□□□ 1.14
LCNL1-204ENST00000482657 VPS8Q8N3P4 1428 aa22.09■■□□□ 1.13
LCNL1-204ENST00000482657 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
LCNL1-204ENST00000482657 NEFLP07196 543 aa22.04■■□□□ 1.12
LCNL1-204ENST00000482657 HIRIP3Q9BW71 556 aaPredicted RBP22.01■■□□□ 1.11
LCNL1-204ENST00000482657 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
LCNL1-204ENST00000482657 SUPT16HQ9Y5B9 1047 aaKnown RBP21.96■■□□□ 1.11
LCNL1-204ENST00000482657 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
LCNL1-204ENST00000482657 ARID3CA6NKF2 412 aa21.93■■□□□ 1.1
LCNL1-204ENST00000482657 DDX10Q13206 875 aaKnown RBP21.91■■□□□ 1.1
LCNL1-204ENST00000482657 KIF27Q86VH2 1401 aa21.9■■□□□ 1.1
LCNL1-204ENST00000482657 FKBP8Q14318 412 aa21.89■■□□□ 1.09
LCNL1-204ENST00000482657 UNC13AQ9UPW8 1703 aa21.88■■□□□ 1.09
LCNL1-204ENST00000482657 CNGB1Q14028 1251 aaPredicted RBP21.88■■□□□ 1.09
LCNL1-204ENST00000482657 SIN3AQ96ST3 1273 aa21.85■■□□□ 1.09
LCNL1-204ENST00000482657 BICRAQ9NZM4 1560 aa21.85■■□□□ 1.09
LCNL1-204ENST00000482657 ERICH6Q7L0X2 663 aa21.79■■□□□ 1.08
LCNL1-204ENST00000482657 TRIM52Q96A61 297 aa21.79■■□□□ 1.08
LCNL1-204ENST00000482657 KCNH8Q96L42 1107 aa21.78■■□□□ 1.08
LCNL1-204ENST00000482657 CUX2O14529 1486 aa21.77■■□□□ 1.08
LCNL1-204ENST00000482657 CCNB3Q8WWL7 1395 aa21.77■■□□□ 1.08
LCNL1-204ENST00000482657 KIF21BO75037 1637 aa21.77■■□□□ 1.08
LCNL1-204ENST00000482657 DHX57Q6P158 1386 aaKnown RBP21.74■■□□□ 1.07
LCNL1-204ENST00000482657 CLSPNQ9HAW4 1339 aa21.73■■□□□ 1.07
LCNL1-204ENST00000482657 TSHZ2Q9NRE2 1034 aa21.7■■□□□ 1.06
LCNL1-204ENST00000482657 CARMIL1Q5VZK9 1371 aa21.68■■□□□ 1.06
LCNL1-204ENST00000482657 CHIC2Q9UKJ5 165 aa21.68■■□□□ 1.06
LCNL1-204ENST00000482657 POLR3GLQ9BT43 218 aa21.68■■□□□ 1.06
LCNL1-204ENST00000482657 ANP32CO43423 234 aa21.66■■□□□ 1.06
LCNL1-204ENST00000482657 ARAP1Q96P48 1450 aa21.65■■□□□ 1.06
LCNL1-204ENST00000482657 RAB3GAP2Q9H2M9 1393 aa21.64■■□□□ 1.05
LCNL1-204ENST00000482657 ANP32EQ9BTT0 268 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms