RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 NISCHQ9Y2I1 1504 aa25.37■■□□□ 1.65
NPHP4-208ENST00000478423 DCAF8L2P0C7V8 631 aa25.33■■□□□ 1.65
NPHP4-208ENST00000478423 SUPT5HO00267 1087 aaKnown RBP24.13■■□□□ 1.45
NPHP4-208ENST00000478423 SHROOM4Q9ULL8 1493 aa23.93■■□□□ 1.42
NPHP4-208ENST00000478423 EHMT2Q96KQ7 1210 aa23.05■■□□□ 1.28
NPHP4-208ENST00000478423 FAM9AQ8IZU1 332 aaPredicted RBP22.67■■□□□ 1.22
NPHP4-208ENST00000478423 APLP2Q06481 763 aa22.37■■□□□ 1.17
NPHP4-208ENST00000478423 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
NPHP4-208ENST00000478423 PCGF6Q9BYE7 350 aa22.26■■□□□ 1.15
NPHP4-208ENST00000478423 TTBK1Q5TCY1 1321 aaPredicted RBP22.22■■□□□ 1.15
NPHP4-208ENST00000478423 RANGAP1P46060 587 aaPredicted RBP22.09■■□□□ 1.13
NPHP4-208ENST00000478423 UBTFP17480 764 aaKnown RBP21.94■■□□□ 1.1
NPHP4-208ENST00000478423 ATP1B4Q9UN42 357 aaPredicted RBP21.76■■□□□ 1.07
NPHP4-208ENST00000478423 CHIC1Q5VXU3 224 aa21.75■■□□□ 1.07
NPHP4-208ENST00000478423 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
NPHP4-208ENST00000478423 ABCC9O60706 1549 aa21.69■■□□□ 1.06
NPHP4-208ENST00000478423 PPARGC1BQ86YN6 1023 aaKnown RBP21.64■■□□□ 1.05
NPHP4-208ENST00000478423 LOC105371045A0A1W2PR82 267 aa21.62■■□□□ 1.05
NPHP4-208ENST00000478423 ZEB1P37275 1124 aaPredicted RBP21.61■■□□□ 1.05
NPHP4-208ENST00000478423 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
NPHP4-208ENST00000478423 TRIM26Q12899 539 aaPredicted RBP21.42■■□□□ 1.02
NPHP4-208ENST00000478423 PELP1Q8IZL8 1130 aaKnown RBP21.41■■□□□ 1.02
NPHP4-208ENST00000478423 CENPBP07199 599 aaPredicted RBP21.21■□□□□ 0.99
NPHP4-208ENST00000478423 ITGAEP38570 1179 aa21.15■□□□□ 0.98
NPHP4-208ENST00000478423 HRCP23327 699 aa21.13■□□□□ 0.97
NPHP4-208ENST00000478423 HNRNPUL2Q1KMD3 747 aaKnown RBP21.08■□□□□ 0.97
NPHP4-208ENST00000478423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.06■□□□□ 0.96
NPHP4-208ENST00000478423 ZCCHC6Q5VYS8 1495 aaKnown RBP21.03■□□□□ 0.96
NPHP4-208ENST00000478423 YTHDC1Q96MU7 727 aaKnown RBP20.96■□□□□ 0.95
NPHP4-208ENST00000478423 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
NPHP4-208ENST00000478423 CCDC180Q9P1Z9 1646 aa20.77■□□□□ 0.92
NPHP4-208ENST00000478423 MYT1LQ9UL68 1186 aa20.75■□□□□ 0.91
NPHP4-208ENST00000478423 CSRNP3Q8WYN3 585 aa20.7■□□□□ 0.9
NPHP4-208ENST00000478423 NEFLP07196 543 aa20.69■□□□□ 0.9
NPHP4-208ENST00000478423 FAM50AQ14320 339 aaKnown RBP20.66■□□□□ 0.9
NPHP4-208ENST00000478423 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
NPHP4-208ENST00000478423 FBLN2P98095 1184 aa20.51■□□□□ 0.87
NPHP4-208ENST00000478423 CNGB1Q14028 1251 aaPredicted RBP20.48■□□□□ 0.87
NPHP4-208ENST00000478423 P3H3Q8IVL6 736 aa20.48■□□□□ 0.87
NPHP4-208ENST00000478423 DIEXFQ68CQ4 756 aaKnown RBP20.47■□□□□ 0.87
NPHP4-208ENST00000478423 ERICH6Q7L0X2 663 aa20.47■□□□□ 0.87
NPHP4-208ENST00000478423 TRIM52Q96A61 297 aa20.43■□□□□ 0.86
NPHP4-208ENST00000478423 NEUROD1Q13562 356 aa20.4■□□□□ 0.86
NPHP4-208ENST00000478423 ARID3CA6NKF2 412 aa20.32■□□□□ 0.84
NPHP4-208ENST00000478423 RSF1Q96T23 1441 aaPredicted RBP20.32■□□□□ 0.84
NPHP4-208ENST00000478423 RB1CC1Q8TDY2 1594 aa20.29■□□□□ 0.84
NPHP4-208ENST00000478423 NACADO15069 1562 aa20.19■□□□□ 0.82
NPHP4-208ENST00000478423 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
NPHP4-208ENST00000478423 DCAF1Q9Y4B6 1507 aa20.15■□□□□ 0.82
NPHP4-208ENST00000478423 SLC4A1APQ9BWU0 796 aaKnown RBP20.14■□□□□ 0.81
NPHP4-208ENST00000478423 ZNF316A6NFI3 1004 aaPredicted RBP20.12■□□□□ 0.81
NPHP4-208ENST00000478423 ZNF777Q9ULD5 760 aaPredicted RBP20.08■□□□□ 0.8
NPHP4-208ENST00000478423 CDK11AQ9UQ88 783 aaPredicted RBP20.07■□□□□ 0.8
NPHP4-208ENST00000478423 MYO15BQ96JP2 1530 aa20.05■□□□□ 0.8
NPHP4-208ENST00000478423 CECR2Q9BXF3 1484 aa19.99■□□□□ 0.79
NPHP4-208ENST00000478423 ANP32CO43423 234 aa19.99■□□□□ 0.79
NPHP4-208ENST00000478423 CLIP1P30622 1438 aa19.94■□□□□ 0.78
NPHP4-208ENST00000478423 WRNQ14191 1432 aaPredicted RBP eCLIP19.93■□□□□ 0.78
NPHP4-208ENST00000478423 BAZ1BQ9UIG0 1483 aaKnown RBP19.93■□□□□ 0.78
NPHP4-208ENST00000478423 EEA1Q15075 1411 aa19.88■□□□□ 0.77
NPHP4-208ENST00000478423 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
NPHP4-208ENST00000478423 GTF3C3Q9Y5Q9 886 aa19.87■□□□□ 0.77
NPHP4-208ENST00000478423 CHIC2Q9UKJ5 165 aa19.84■□□□□ 0.77
NPHP4-208ENST00000478423 DAXXQ9UER7 740 aaPredicted RBP19.83■□□□□ 0.76
NPHP4-208ENST00000478423 CEP162Q5TB80 1403 aa19.82■□□□□ 0.76
NPHP4-208ENST00000478423 CHMP7Q8WUX9 453 aaPredicted RBP19.81■□□□□ 0.76
NPHP4-208ENST00000478423 MTUS2Q5JR59 1369 aa19.8■□□□□ 0.76
NPHP4-208ENST00000478423 GOLGA3Q08378 1498 aa19.8■□□□□ 0.76
NPHP4-208ENST00000478423 TONSLQ96HA7 1378 aa19.79■□□□□ 0.76
NPHP4-208ENST00000478423 BCANQ96GW7 911 aa19.78■□□□□ 0.76
NPHP4-208ENST00000478423 KIF27Q86VH2 1401 aa19.72■□□□□ 0.75
NPHP4-208ENST00000478423 TNIKQ9UKE5 1360 aa19.71■□□□□ 0.75
NPHP4-208ENST00000478423 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
NPHP4-208ENST00000478423 NPM1P06748 294 aaKnown RBP eCLIP19.68■□□□□ 0.74
NPHP4-208ENST00000478423 CLSPNQ9HAW4 1339 aa19.68■□□□□ 0.74
NPHP4-208ENST00000478423 ACIN1Q9UKV3 1341 aaKnown RBP19.68■□□□□ 0.74
NPHP4-208ENST00000478423 DDX10Q13206 875 aaKnown RBP19.67■□□□□ 0.74
NPHP4-208ENST00000478423 TSPY4P0CV99 314 aa19.66■□□□□ 0.74
NPHP4-208ENST00000478423 TSPY10P0CW01 314 aa19.66■□□□□ 0.74
NPHP4-208ENST00000478423 CEP164Q9UPV0 1460 aa19.65■□□□□ 0.74
NPHP4-208ENST00000478423 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.61■□□□□ 0.73
NPHP4-208ENST00000478423 CHGAP10645 457 aaKnown RBP19.6■□□□□ 0.73
NPHP4-208ENST00000478423 SOGA1O94964 1423 aa19.6■□□□□ 0.73
NPHP4-208ENST00000478423 MYT1Q01538 1121 aa19.59■□□□□ 0.73
NPHP4-208ENST00000478423 RRP7BPQ9NSQ0 103 aa19.59■□□□□ 0.73
NPHP4-208ENST00000478423 CCDC88BA6NC98 1476 aa19.55■□□□□ 0.72
NPHP4-208ENST00000478423 PLEKHD1A6NEE1 506 aa19.51■□□□□ 0.71
NPHP4-208ENST00000478423 ESF1Q9H501 851 aaKnown RBP19.51■□□□□ 0.71
NPHP4-208ENST00000478423 HIRIP3Q9BW71 556 aaPredicted RBP19.51■□□□□ 0.71
NPHP4-208ENST00000478423 KCNH8Q96L42 1107 aa19.49■□□□□ 0.71
NPHP4-208ENST00000478423 KDM2AQ9Y2K7 1162 aa19.49■□□□□ 0.71
NPHP4-208ENST00000478423 HNRNPUQ00839 825 aaKnown RBP eCLIP19.47■□□□□ 0.71
NPHP4-208ENST00000478423 STAG3Q9UJ98 1225 aa19.46■□□□□ 0.71
NPHP4-208ENST00000478423 CUX2O14529 1486 aa19.45■□□□□ 0.7
NPHP4-208ENST00000478423 CARMIL1Q5VZK9 1371 aa19.45■□□□□ 0.7
NPHP4-208ENST00000478423 FAM9BQ8IZU0 186 aa19.44■□□□□ 0.7
NPHP4-208ENST00000478423 ABCC8Q09428 1581 aa19.44■□□□□ 0.7
NPHP4-208ENST00000478423 MIER1Q8N108 512 aa19.42■□□□□ 0.7
NPHP4-208ENST00000478423 NEFMP07197 916 aa19.42■□□□□ 0.7
NPHP4-208ENST00000478423 CFDP1Q9UEE9 299 aaPredicted RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms