RNA–Protein interactions for RNA: ENST00000478254.5

GFM1-207, Transcript of G elongation factor mitochondrial 1, humanhuman

TSL 5

Gene GFM1, Length 3,470 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFM1-207ENST00000478254 NISCHQ9Y2I1 1504 aa20.33■□□□□ 0.85
GFM1-207ENST00000478254 SUPT5HO00267 1087 aaKnown RBP19.34■□□□□ 0.69
GFM1-207ENST00000478254 SHROOM4Q9ULL8 1493 aa19.28■□□□□ 0.68
GFM1-207ENST00000478254 PCGF6Q9BYE7 350 aa19.16■□□□□ 0.66
GFM1-207ENST00000478254 PPARGC1BQ86YN6 1023 aaKnown RBP19.15■□□□□ 0.66
GFM1-207ENST00000478254 HRCP23327 699 aa19.06■□□□□ 0.64
GFM1-207ENST00000478254 DCAF8L2P0C7V8 631 aa18.58■□□□□ 0.56
GFM1-207ENST00000478254 LOC105371045A0A1W2PR82 267 aa18.43■□□□□ 0.54
GFM1-207ENST00000478254 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
GFM1-207ENST00000478254 EHMT2Q96KQ7 1210 aa18.42■□□□□ 0.54
GFM1-207ENST00000478254 PELP1Q8IZL8 1130 aaKnown RBP18.35■□□□□ 0.53
GFM1-207ENST00000478254 MYO15BQ96JP2 1530 aa18.32■□□□□ 0.52
GFM1-207ENST00000478254 SCAF1Q9H7N4 1312 aaKnown RBP18.2■□□□□ 0.5
GFM1-207ENST00000478254 TRIM26Q12899 539 aaPredicted RBP18.08■□□□□ 0.49
GFM1-207ENST00000478254 FAM9AQ8IZU1 332 aaPredicted RBP18.08■□□□□ 0.49
GFM1-207ENST00000478254 TTBK1Q5TCY1 1321 aaPredicted RBP17.89■□□□□ 0.45
GFM1-207ENST00000478254 ZEB1P37275 1124 aaPredicted RBP17.86■□□□□ 0.45
GFM1-207ENST00000478254 GTF3C3Q9Y5Q9 886 aa17.82■□□□□ 0.44
GFM1-207ENST00000478254 YTHDC1Q96MU7 727 aaKnown RBP17.8■□□□□ 0.44
GFM1-207ENST00000478254 NEUROD1Q13562 356 aa17.78■□□□□ 0.44
GFM1-207ENST00000478254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.73■□□□□ 0.43
GFM1-207ENST00000478254 CCER1Q8TC90 406 aaPredicted RBP17.73■□□□□ 0.43
GFM1-207ENST00000478254 ACIN1Q9UKV3 1341 aaKnown RBP17.7■□□□□ 0.42
GFM1-207ENST00000478254 CENPBP07199 599 aaPredicted RBP17.66■□□□□ 0.42
GFM1-207ENST00000478254 DCAF1Q9Y4B6 1507 aa17.63■□□□□ 0.41
GFM1-207ENST00000478254 TRIM41Q8WV44 630 aa17.6■□□□□ 0.41
GFM1-207ENST00000478254 MYT1Q01538 1121 aa17.56■□□□□ 0.4
GFM1-207ENST00000478254 DIEXFQ68CQ4 756 aaKnown RBP17.55■□□□□ 0.4
GFM1-207ENST00000478254 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
GFM1-207ENST00000478254 ZCCHC6Q5VYS8 1495 aaKnown RBP17.17■□□□□ 0.34
GFM1-207ENST00000478254 MIER1Q8N108 512 aa17.09■□□□□ 0.33
GFM1-207ENST00000478254 HNRNPUL2Q1KMD3 747 aaKnown RBP17.06■□□□□ 0.32
GFM1-207ENST00000478254 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
GFM1-207ENST00000478254 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
GFM1-207ENST00000478254 BCANQ96GW7 911 aa16.98■□□□□ 0.31
GFM1-207ENST00000478254 UBTFP17480 764 aaKnown RBP16.91■□□□□ 0.3
GFM1-207ENST00000478254 BCL11AQ9H165 835 aa16.82■□□□□ 0.28
GFM1-207ENST00000478254 SUPT16HQ9Y5B9 1047 aaKnown RBP16.72■□□□□ 0.27
GFM1-207ENST00000478254 ANP32EQ9BTT0 268 aa16.71■□□□□ 0.26
GFM1-207ENST00000478254 CSRNP3Q8WYN3 585 aa16.68■□□□□ 0.26
GFM1-207ENST00000478254 APLP2Q06481 763 aa16.68■□□□□ 0.26
GFM1-207ENST00000478254 TSHZ2Q9NRE2 1034 aa16.64■□□□□ 0.25
GFM1-207ENST00000478254 RSF1Q96T23 1441 aaPredicted RBP16.61■□□□□ 0.25
GFM1-207ENST00000478254 ITGAEP38570 1179 aa16.6■□□□□ 0.25
GFM1-207ENST00000478254 FKBP8Q14318 412 aa16.57■□□□□ 0.24
GFM1-207ENST00000478254 ERICH6Q7L0X2 663 aa16.55■□□□□ 0.24
GFM1-207ENST00000478254 RB1CC1Q8TDY2 1594 aa16.53■□□□□ 0.24
GFM1-207ENST00000478254 KCNH8Q96L42 1107 aa16.5■□□□□ 0.23
GFM1-207ENST00000478254 NEFLP07196 543 aa16.5■□□□□ 0.23
GFM1-207ENST00000478254 SCRIBQ14160 1630 aa16.44■□□□□ 0.22
GFM1-207ENST00000478254 CEP162Q5TB80 1403 aa16.42■□□□□ 0.22
GFM1-207ENST00000478254 TRIM52Q96A61 297 aa16.41■□□□□ 0.22
GFM1-207ENST00000478254 HIRIP3Q9BW71 556 aaPredicted RBP16.38■□□□□ 0.21
GFM1-207ENST00000478254 IRX6P78412 446 aaPredicted RBP16.36■□□□□ 0.21
GFM1-207ENST00000478254 DDX10Q13206 875 aaKnown RBP16.34■□□□□ 0.21
GFM1-207ENST00000478254 RBM19Q9Y4C8 960 aaKnown RBP16.34■□□□□ 0.21
GFM1-207ENST00000478254 ABCC9O60706 1549 aa16.27■□□□□ 0.2
GFM1-207ENST00000478254 SOGA1O94964 1423 aa16.27■□□□□ 0.2
GFM1-207ENST00000478254 CECR2Q9BXF3 1484 aa16.26■□□□□ 0.19
GFM1-207ENST00000478254 CLSPNQ9HAW4 1339 aa16.22■□□□□ 0.19
GFM1-207ENST00000478254 CNGB1Q14028 1251 aaPredicted RBP16.21■□□□□ 0.19
GFM1-207ENST00000478254 CCDC88BA6NC98 1476 aa16.19■□□□□ 0.18
GFM1-207ENST00000478254 NBR1Q14596 966 aa16.19■□□□□ 0.18
GFM1-207ENST00000478254 ABCC8Q09428 1581 aa16.18■□□□□ 0.18
GFM1-207ENST00000478254 ATP1B4Q9UN42 357 aaPredicted RBP16.17■□□□□ 0.18
GFM1-207ENST00000478254 RUSC2Q8N2Y8 1516 aa16.14■□□□□ 0.17
GFM1-207ENST00000478254 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
GFM1-207ENST00000478254 CDK11AQ9UQ88 783 aaPredicted RBP16.13■□□□□ 0.17
GFM1-207ENST00000478254 MSH5O43196 834 aa16.09■□□□□ 0.17
GFM1-207ENST00000478254 MROH2BQ7Z745 1585 aa16.08■□□□□ 0.17
GFM1-207ENST00000478254 WRNQ14191 1432 aaPredicted RBP eCLIP16.07■□□□□ 0.16
GFM1-207ENST00000478254 ANP32CO43423 234 aa16.06■□□□□ 0.16
GFM1-207ENST00000478254 HNRNPUQ00839 825 aaKnown RBP eCLIP16.04■□□□□ 0.16
GFM1-207ENST00000478254 SIN3AQ96ST3 1273 aa16.04■□□□□ 0.16
GFM1-207ENST00000478254 CLIP1P30622 1438 aa16.04■□□□□ 0.16
GFM1-207ENST00000478254 SENP3-EIF4A1A0A087X0R7 540 aa16.04■□□□□ 0.16
GFM1-207ENST00000478254 RTN4Q9NQC3 1192 aaKnown RBP16.03■□□□□ 0.16
GFM1-207ENST00000478254 PRKCSHP14314 528 aaPredicted RBP16.02■□□□□ 0.16
GFM1-207ENST00000478254 DEKP35659 375 aaKnown RBP16.02■□□□□ 0.15
GFM1-207ENST00000478254 FAM50AQ14320 339 aaKnown RBP16.01■□□□□ 0.15
GFM1-207ENST00000478254 WIZO95785 1651 aa16■□□□□ 0.15
GFM1-207ENST00000478254 KANK4Q5T7N3 995 aaPredicted RBP15.99■□□□□ 0.15
GFM1-207ENST00000478254 DHX57Q6P158 1386 aaKnown RBP15.97■□□□□ 0.15
GFM1-207ENST00000478254 CCDC136Q96JN2 1154 aa15.94■□□□□ 0.14
GFM1-207ENST00000478254 GOLGA3Q08378 1498 aa15.94■□□□□ 0.14
GFM1-207ENST00000478254 ANO8Q9HCE9 1232 aaPredicted RBP15.93■□□□□ 0.14
GFM1-207ENST00000478254 B4GALNT3Q6L9W6 998 aa15.92■□□□□ 0.14
GFM1-207ENST00000478254 RTL5Q5HYW3 569 aaPredicted RBP15.88■□□□□ 0.13
GFM1-207ENST00000478254 FAM9BQ8IZU0 186 aa15.87■□□□□ 0.13
GFM1-207ENST00000478254 NPM2Q86SE8 214 aaKnown RBP15.86■□□□□ 0.13
GFM1-207ENST00000478254 PABPN1Q86U42 306 aaKnown RBP eCLIP15.86■□□□□ 0.13
GFM1-207ENST00000478254 POLR3GLQ9BT43 218 aa15.86■□□□□ 0.13
GFM1-207ENST00000478254 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.85■□□□□ 0.13
GFM1-207ENST00000478254 P3H3Q8IVL6 736 aa15.83■□□□□ 0.12
GFM1-207ENST00000478254 VPS8Q8N3P4 1428 aa15.81■□□□□ 0.12
GFM1-207ENST00000478254 EIF5BO60841 1220 aaKnown RBP15.77■□□□□ 0.12
GFM1-207ENST00000478254 BAZ1BQ9UIG0 1483 aaKnown RBP15.77■□□□□ 0.11
GFM1-207ENST00000478254 SALL2Q9Y467 1007 aaPredicted RBP15.76■□□□□ 0.11
GFM1-207ENST00000478254 PAK3O75914 559 aaPredicted RBP15.75■□□□□ 0.11
GFM1-207ENST00000478254 NOP58Q9Y2X3 529 aaKnown RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms