RNA–Protein interactions for RNA: ENST00000455302.5

LSMEM1-203, Transcript of leucine rich single-pass membrane protein 1, humanhuman

TSL 2

Gene LSMEM1, Length 819 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSMEM1-203ENST00000455302 AEBP2Q6ZN18 517 aaPredicted RBP23.78■■□□□ 1.4
LSMEM1-203ENST00000455302 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
LSMEM1-203ENST00000455302 PHF23Q9BUL5 403 aaPredicted RBP20.62■□□□□ 0.89
LSMEM1-203ENST00000455302 SENP3Q9H4L4 574 aaPredicted RBP20.29■□□□□ 0.84
LSMEM1-203ENST00000455302 PLPPR3Q6T4P5 718 aa19.41■□□□□ 0.7
LSMEM1-203ENST00000455302 FOXD1Q16676 465 aa18.84■□□□□ 0.61
LSMEM1-203ENST00000455302 ADRA2BP18089 450 aa18.02■□□□□ 0.48
LSMEM1-203ENST00000455302 PPP6R1Q9UPN7 881 aa17.97■□□□□ 0.47
LSMEM1-203ENST00000455302 PIAS4Q8N2W9 510 aaPredicted RBP17.62■□□□□ 0.41
LSMEM1-203ENST00000455302 MSH5O43196 834 aa17.59■□□□□ 0.41
LSMEM1-203ENST00000455302 KCNA4P22459 653 aa17.44■□□□□ 0.38
LSMEM1-203ENST00000455302 PPP4R3CPQ6ZMV5 832 aa17.14■□□□□ 0.33
LSMEM1-203ENST00000455302 EHMT2Q96KQ7 1210 aa17.03■□□□□ 0.32
LSMEM1-203ENST00000455302 NCBP3Q53F19 620 aaKnown RBP17.01■□□□□ 0.31
LSMEM1-203ENST00000455302 SLC4A1APQ9BWU0 796 aaKnown RBP16.81■□□□□ 0.28
LSMEM1-203ENST00000455302 NISCHQ9Y2I1 1504 aa16.71■□□□□ 0.27
LSMEM1-203ENST00000455302 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
LSMEM1-203ENST00000455302 POTEDQ86YR6 584 aa16.68■□□□□ 0.26
LSMEM1-203ENST00000455302 NPM3O75607 178 aaKnown RBP16.61■□□□□ 0.25
LSMEM1-203ENST00000455302 CNKSR2Q8WXI2 1034 aa16.57■□□□□ 0.24
LSMEM1-203ENST00000455302 CSRNP3Q8WYN3 585 aa16.52■□□□□ 0.24
LSMEM1-203ENST00000455302 MAPK8IP2Q13387 824 aaPredicted RBP16.15■□□□□ 0.18
LSMEM1-203ENST00000455302 DMRT2Q9Y5R5 561 aa16.15■□□□□ 0.18
LSMEM1-203ENST00000455302 DNAJC5BQ9UF47 199 aa16.11■□□□□ 0.17
LSMEM1-203ENST00000455302 RNF216Q9NWF9 866 aaPredicted RBP16.07■□□□□ 0.16
LSMEM1-203ENST00000455302 ZBTB22O15209 634 aa15.99■□□□□ 0.15
LSMEM1-203ENST00000455302 FOXD4L1Q9NU39 408 aa15.93■□□□□ 0.14
LSMEM1-203ENST00000455302 HOXD11P31277 338 aaPredicted RBP15.79■□□□□ 0.12
LSMEM1-203ENST00000455302 ABCC9O60706 1549 aa15.61■□□□□ 0.09
LSMEM1-203ENST00000455302 SLC4A2P04920 1241 aa15.48■□□□□ 0.07
LSMEM1-203ENST00000455302 MYCNP04198 464 aaPredicted RBP15.41■□□□□ 0.06
LSMEM1-203ENST00000455302 ATXN8OSP0DMR3 200 aa15.39■□□□□ 0.05
LSMEM1-203ENST00000455302 DCAF8L1A6NGE4 600 aa15.24■□□□□ 0.03
LSMEM1-203ENST00000455302 CCDC180Q9P1Z9 1646 aa15.11■□□□□ 0.01
LSMEM1-203ENST00000455302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.01
LSMEM1-203ENST00000455302 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.06■□□□□ 0
LSMEM1-203ENST00000455302 HNRNPUL2Q1KMD3 747 aaKnown RBP15.06■□□□□ 0
LSMEM1-203ENST00000455302 RNF39Q9H2S5 420 aa15.03■□□□□ -0
LSMEM1-203ENST00000455302 SAMD1Q6SPF0 538 aaPredicted RBP14.99□□□□□ -0.01
LSMEM1-203ENST00000455302 FKBP8Q14318 412 aa14.93□□□□□ -0.02
LSMEM1-203ENST00000455302 AMER1Q5JTC6 1135 aaPredicted RBP14.86□□□□□ -0.03
LSMEM1-203ENST00000455302 C1QBPQ07021 282 aaKnown RBP14.84□□□□□ -0.03
LSMEM1-203ENST00000455302 U3KPZ7 1027 aaPredicted RBP14.84□□□□□ -0.03
LSMEM1-203ENST00000455302 CACNB1Q02641 598 aaPredicted RBP14.82□□□□□ -0.04
LSMEM1-203ENST00000455302 ATF5Q9Y2D1 282 aaPredicted RBP14.8□□□□□ -0.04
LSMEM1-203ENST00000455302 APLP2Q06481 763 aa14.78□□□□□ -0.04
LSMEM1-203ENST00000455302 RTN4Q9NQC3 1192 aaKnown RBP14.71□□□□□ -0.05
LSMEM1-203ENST00000455302 RB1CC1Q8TDY2 1594 aa14.64□□□□□ -0.07
LSMEM1-203ENST00000455302 ZNF219Q9P2Y4 722 aaPredicted RBP14.61□□□□□ -0.07
LSMEM1-203ENST00000455302 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
LSMEM1-203ENST00000455302 SLC24A1O60721 1099 aa14.46□□□□□ -0.09
LSMEM1-203ENST00000455302 NACADO15069 1562 aa14.43□□□□□ -0.1
LSMEM1-203ENST00000455302 DCAF8L2P0C7V8 631 aa14.41□□□□□ -0.1
LSMEM1-203ENST00000455302 FBXO3Q9UK99 471 aa14.36□□□□□ -0.11
LSMEM1-203ENST00000455302 FBLN2P98095 1184 aa14.33□□□□□ -0.12
LSMEM1-203ENST00000455302 SPDYE4A6NLX3 237 aa14.32□□□□□ -0.12
LSMEM1-203ENST00000455302 TRHP20396 242 aaPredicted RBP14.28□□□□□ -0.12
LSMEM1-203ENST00000455302 SPINK5Q9NQ38 1064 aaPredicted RBP14.23□□□□□ -0.13
LSMEM1-203ENST00000455302 MKRN4PQ13434 485 aaPredicted RBP14.21□□□□□ -0.13
LSMEM1-203ENST00000455302 CAPN15O75808 1086 aa14.2□□□□□ -0.14
LSMEM1-203ENST00000455302 POLA2Q14181 598 aa14.2□□□□□ -0.14
LSMEM1-203ENST00000455302 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
LSMEM1-203ENST00000455302 UNC13AQ9UPW8 1703 aa14.17□□□□□ -0.14
LSMEM1-203ENST00000455302 PROM2Q8N271 834 aa14.14□□□□□ -0.15
LSMEM1-203ENST00000455302 DSG3P32926 999 aa14.13□□□□□ -0.15
LSMEM1-203ENST00000455302 ZBTB12Q9Y330 459 aaPredicted RBP14.13□□□□□ -0.15
LSMEM1-203ENST00000455302 CECR2Q9BXF3 1484 aa14.1□□□□□ -0.15
LSMEM1-203ENST00000455302 MYO15BQ96JP2 1530 aa14.08□□□□□ -0.16
LSMEM1-203ENST00000455302 DNAJC5Q9H3Z4 198 aa14.06□□□□□ -0.16
LSMEM1-203ENST00000455302 VASPP50552 380 aaPredicted RBP14.03□□□□□ -0.16
LSMEM1-203ENST00000455302 CC2D2AQ9P2K1 1620 aa14.02□□□□□ -0.16
LSMEM1-203ENST00000455302 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
LSMEM1-203ENST00000455302 ABCB7O75027 752 aa13.92□□□□□ -0.18
LSMEM1-203ENST00000455302 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
LSMEM1-203ENST00000455302 IFNLR1Q8IU57 520 aaPredicted RBP13.84□□□□□ -0.19
LSMEM1-203ENST00000455302 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
LSMEM1-203ENST00000455302 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
LSMEM1-203ENST00000455302 ZCCHC6Q5VYS8 1495 aaKnown RBP13.77□□□□□ -0.21
LSMEM1-203ENST00000455302 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
LSMEM1-203ENST00000455302 STAG3Q9UJ98 1225 aa13.76□□□□□ -0.21
LSMEM1-203ENST00000455302 SPDYE2BA6NHP3 402 aa13.75□□□□□ -0.21
LSMEM1-203ENST00000455302 SPDYE6P0CI01 402 aa13.75□□□□□ -0.21
LSMEM1-203ENST00000455302 SPDYE2Q495Y8 402 aa13.75□□□□□ -0.21
LSMEM1-203ENST00000455302 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
LSMEM1-203ENST00000455302 PLCB2Q00722 1185 aa13.66□□□□□ -0.22
LSMEM1-203ENST00000455302 SPOCK2Q92563 424 aa13.66□□□□□ -0.22
LSMEM1-203ENST00000455302 SSUH2Q9Y2M2 353 aa13.65□□□□□ -0.22
LSMEM1-203ENST00000455302 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
LSMEM1-203ENST00000455302 PKD2Q13563 968 aa13.63□□□□□ -0.23
LSMEM1-203ENST00000455302 PLCD3Q8N3E9 789 aa13.61□□□□□ -0.23
LSMEM1-203ENST00000455302 CUX2O14529 1486 aa13.6□□□□□ -0.23
LSMEM1-203ENST00000455302 MIER1Q8N108 512 aa13.55□□□□□ -0.24
LSMEM1-203ENST00000455302 ERCC6Q03468 1493 aa13.54□□□□□ -0.24
LSMEM1-203ENST00000455302 PLEKHG5O94827 1062 aa13.53□□□□□ -0.24
LSMEM1-203ENST00000455302 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
LSMEM1-203ENST00000455302 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
LSMEM1-203ENST00000455302 ZBTB47Q9UFB7 747 aaPredicted RBP13.49□□□□□ -0.25
LSMEM1-203ENST00000455302 HAP1P54257 671 aaPredicted RBP13.47□□□□□ -0.25
LSMEM1-203ENST00000455302 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.44□□□□□ -0.26
LSMEM1-203ENST00000455302 BBXQ8WY36 941 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms