RNA–Protein interactions for RNA: ENST00000449510.6

UBE3B-204, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,771 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-204ENST00000449510 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
UBE3B-204ENST00000449510 SUPT5HO00267 1087 aaKnown RBP21.16■□□□□ 0.98
UBE3B-204ENST00000449510 SHROOM4Q9ULL8 1493 aa20.97■□□□□ 0.95
UBE3B-204ENST00000449510 DCAF8L2P0C7V8 631 aa20.94■□□□□ 0.94
UBE3B-204ENST00000449510 PCGF6Q9BYE7 350 aa20.61■□□□□ 0.89
UBE3B-204ENST00000449510 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
UBE3B-204ENST00000449510 PPARGC1BQ86YN6 1023 aaKnown RBP20.24■□□□□ 0.83
UBE3B-204ENST00000449510 HRCP23327 699 aa20.1■□□□□ 0.81
UBE3B-204ENST00000449510 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
UBE3B-204ENST00000449510 LOC105371045A0A1W2PR82 267 aa19.8■□□□□ 0.76
UBE3B-204ENST00000449510 TTBK1Q5TCY1 1321 aaPredicted RBP19.73■□□□□ 0.75
UBE3B-204ENST00000449510 CHIC1Q5VXU3 224 aa19.66■□□□□ 0.74
UBE3B-204ENST00000449510 PELP1Q8IZL8 1130 aaKnown RBP19.43■□□□□ 0.7
UBE3B-204ENST00000449510 TRIM26Q12899 539 aaPredicted RBP19.39■□□□□ 0.69
UBE3B-204ENST00000449510 YTHDC1Q96MU7 727 aaKnown RBP19.34■□□□□ 0.69
UBE3B-204ENST00000449510 CCER1Q8TC90 406 aaPredicted RBP19.33■□□□□ 0.68
UBE3B-204ENST00000449510 TRIM41Q8WV44 630 aa19.26■□□□□ 0.67
UBE3B-204ENST00000449510 ZEB1P37275 1124 aaPredicted RBP19.26■□□□□ 0.67
UBE3B-204ENST00000449510 CENPBP07199 599 aaPredicted RBP19.16■□□□□ 0.66
UBE3B-204ENST00000449510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.1■□□□□ 0.65
UBE3B-204ENST00000449510 MYO15BQ96JP2 1530 aa19.01■□□□□ 0.63
UBE3B-204ENST00000449510 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
UBE3B-204ENST00000449510 RANGAP1P46060 587 aaPredicted RBP18.98■□□□□ 0.63
UBE3B-204ENST00000449510 GTF3C3Q9Y5Q9 886 aa18.97■□□□□ 0.63
UBE3B-204ENST00000449510 DIEXFQ68CQ4 756 aaKnown RBP18.85■□□□□ 0.61
UBE3B-204ENST00000449510 NEUROD1Q13562 356 aa18.76■□□□□ 0.59
UBE3B-204ENST00000449510 ACIN1Q9UKV3 1341 aaKnown RBP18.74■□□□□ 0.59
UBE3B-204ENST00000449510 UBTFP17480 764 aaKnown RBP18.69■□□□□ 0.58
UBE3B-204ENST00000449510 MYT1Q01538 1121 aa18.65■□□□□ 0.58
UBE3B-204ENST00000449510 HNRNPUL2Q1KMD3 747 aaKnown RBP18.65■□□□□ 0.58
UBE3B-204ENST00000449510 APLP2Q06481 763 aa18.64■□□□□ 0.58
UBE3B-204ENST00000449510 DCAF1Q9Y4B6 1507 aa18.44■□□□□ 0.54
UBE3B-204ENST00000449510 BCANQ96GW7 911 aa18.39■□□□□ 0.53
UBE3B-204ENST00000449510 ITGAEP38570 1179 aa18.36■□□□□ 0.53
UBE3B-204ENST00000449510 ZNF316A6NFI3 1004 aaPredicted RBP18.29■□□□□ 0.52
UBE3B-204ENST00000449510 ERICH6Q7L0X2 663 aa18.25■□□□□ 0.51
UBE3B-204ENST00000449510 MIER1Q8N108 512 aa18.2■□□□□ 0.5
UBE3B-204ENST00000449510 ATP1B4Q9UN42 357 aaPredicted RBP18.18■□□□□ 0.5
UBE3B-204ENST00000449510 NEFLP07196 543 aa18.16■□□□□ 0.5
UBE3B-204ENST00000449510 CNGB1Q14028 1251 aaPredicted RBP18.05■□□□□ 0.48
UBE3B-204ENST00000449510 ZCCHC6Q5VYS8 1495 aaKnown RBP18.03■□□□□ 0.48
UBE3B-204ENST00000449510 CCDC180Q9P1Z9 1646 aa17.91■□□□□ 0.46
UBE3B-204ENST00000449510 FKBP8Q14318 412 aa17.86■□□□□ 0.45
UBE3B-204ENST00000449510 CSRNP3Q8WYN3 585 aa17.78■□□□□ 0.44
UBE3B-204ENST00000449510 HIRIP3Q9BW71 556 aaPredicted RBP17.77■□□□□ 0.43
UBE3B-204ENST00000449510 TRIM52Q96A61 297 aa17.75■□□□□ 0.43
UBE3B-204ENST00000449510 POLR3GLQ9BT43 218 aa17.72■□□□□ 0.43
UBE3B-204ENST00000449510 DDX10Q13206 875 aaKnown RBP17.72■□□□□ 0.43
UBE3B-204ENST00000449510 SUPT16HQ9Y5B9 1047 aaKnown RBP17.68■□□□□ 0.42
UBE3B-204ENST00000449510 IRX6P78412 446 aaPredicted RBP17.67■□□□□ 0.42
UBE3B-204ENST00000449510 FAM50AQ14320 339 aaKnown RBP17.66■□□□□ 0.42
UBE3B-204ENST00000449510 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.41
UBE3B-204ENST00000449510 ANP32EQ9BTT0 268 aa17.62■□□□□ 0.41
UBE3B-204ENST00000449510 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
UBE3B-204ENST00000449510 BCL11AQ9H165 835 aa17.58■□□□□ 0.4
UBE3B-204ENST00000449510 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
UBE3B-204ENST00000449510 ANP32CO43423 234 aa17.55■□□□□ 0.4
UBE3B-204ENST00000449510 CDK11AQ9UQ88 783 aaPredicted RBP17.53■□□□□ 0.4
UBE3B-204ENST00000449510 ABCC9O60706 1549 aa17.52■□□□□ 0.4
UBE3B-204ENST00000449510 KCNH8Q96L42 1107 aa17.5■□□□□ 0.39
UBE3B-204ENST00000449510 TSHZ2Q9NRE2 1034 aa17.5■□□□□ 0.39
UBE3B-204ENST00000449510 CEP162Q5TB80 1403 aa17.49■□□□□ 0.39
UBE3B-204ENST00000449510 SENP3-EIF4A1A0A087X0R7 540 aa17.49■□□□□ 0.39
UBE3B-204ENST00000449510 P3H3Q8IVL6 736 aa17.48■□□□□ 0.39
UBE3B-204ENST00000449510 NBR1Q14596 966 aa17.47■□□□□ 0.39
UBE3B-204ENST00000449510 HNRNPUQ00839 825 aaKnown RBP eCLIP17.44■□□□□ 0.38
UBE3B-204ENST00000449510 RTL5Q5HYW3 569 aaPredicted RBP17.39■□□□□ 0.38
UBE3B-204ENST00000449510 RBM19Q9Y4C8 960 aaKnown RBP17.33■□□□□ 0.37
UBE3B-204ENST00000449510 RB1CC1Q8TDY2 1594 aa17.33■□□□□ 0.37
UBE3B-204ENST00000449510 NPM2Q86SE8 214 aaKnown RBP17.33■□□□□ 0.36
UBE3B-204ENST00000449510 FAM9BQ8IZU0 186 aa17.33■□□□□ 0.36
UBE3B-204ENST00000449510 SOGA1O94964 1423 aa17.32■□□□□ 0.36
UBE3B-204ENST00000449510 SIN3AQ96ST3 1273 aa17.32■□□□□ 0.36
UBE3B-204ENST00000449510 CLSPNQ9HAW4 1339 aa17.3■□□□□ 0.36
UBE3B-204ENST00000449510 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
UBE3B-204ENST00000449510 ZNF326Q5BKZ1 582 aaKnown RBP17.27■□□□□ 0.36
UBE3B-204ENST00000449510 CLIP1P30622 1438 aa17.26■□□□□ 0.35
UBE3B-204ENST00000449510 ARID3CA6NKF2 412 aa17.23■□□□□ 0.35
UBE3B-204ENST00000449510 SALL2Q9Y467 1007 aaPredicted RBP17.21■□□□□ 0.35
UBE3B-204ENST00000449510 DAXXQ9UER7 740 aaPredicted RBP17.2■□□□□ 0.34
UBE3B-204ENST00000449510 TNIKQ9UKE5 1360 aa17.19■□□□□ 0.34
UBE3B-204ENST00000449510 RTN4Q9NQC3 1192 aaKnown RBP17.19■□□□□ 0.34
UBE3B-204ENST00000449510 CCDC88BA6NC98 1476 aa17.16■□□□□ 0.34
UBE3B-204ENST00000449510 KANK4Q5T7N3 995 aaPredicted RBP17.15■□□□□ 0.34
UBE3B-204ENST00000449510 EIF5BO60841 1220 aaKnown RBP17.15■□□□□ 0.34
UBE3B-204ENST00000449510 B4GALNT3Q6L9W6 998 aa17.13■□□□□ 0.33
UBE3B-204ENST00000449510 ABCC8Q09428 1581 aa17.12■□□□□ 0.33
UBE3B-204ENST00000449510 ANP32AP39687 249 aaKnown RBP17.1■□□□□ 0.33
UBE3B-204ENST00000449510 CHIC2Q9UKJ5 165 aa17.08■□□□□ 0.33
UBE3B-204ENST00000449510 TONSLQ96HA7 1378 aa17.08■□□□□ 0.32
UBE3B-204ENST00000449510 MRS2Q9HD23 443 aa17.06■□□□□ 0.32
UBE3B-204ENST00000449510 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
UBE3B-204ENST00000449510 CCDC136Q96JN2 1154 aa17.04■□□□□ 0.32
UBE3B-204ENST00000449510 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
UBE3B-204ENST00000449510 DEKP35659 375 aaKnown RBP17.03■□□□□ 0.32
UBE3B-204ENST00000449510 MROH2BQ7Z745 1585 aa17.01■□□□□ 0.31
UBE3B-204ENST00000449510 ZBTB47Q9UFB7 747 aaPredicted RBP17.01■□□□□ 0.31
UBE3B-204ENST00000449510 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
UBE3B-204ENST00000449510 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.3
UBE3B-204ENST00000449510 ARXQ96QS3 562 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms