RNA–Protein interactions for RNA: ENST00000446548.1

LINC00578-204, long intergenic non-protein coding RNA 578, humanhuman

TSL 4 BASIC

Gene LINC00578, Length 519 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00578-204ENST00000446548 AEBP2Q6ZN18 517 aaPredicted RBP26.48■■□□□ 1.83
LINC00578-204ENST00000446548 CHIC1Q5VXU3 224 aa25.76■■□□□ 1.71
LINC00578-204ENST00000446548 SENP3Q9H4L4 574 aaPredicted RBP22.64■■□□□ 1.21
LINC00578-204ENST00000446548 PHF23Q9BUL5 403 aaPredicted RBP22.56■■□□□ 1.2
LINC00578-204ENST00000446548 FOXD1Q16676 465 aa20.95■□□□□ 0.94
LINC00578-204ENST00000446548 PLPPR3Q6T4P5 718 aa20.89■□□□□ 0.93
LINC00578-204ENST00000446548 ADRA2BP18089 450 aa19.97■□□□□ 0.79
LINC00578-204ENST00000446548 PPP6R1Q9UPN7 881 aa19.96■□□□□ 0.79
LINC00578-204ENST00000446548 NISCHQ9Y2I1 1504 aa19.88■□□□□ 0.77
LINC00578-204ENST00000446548 PIAS4Q8N2W9 510 aaPredicted RBP19.78■□□□□ 0.76
LINC00578-204ENST00000446548 MSH5O43196 834 aa19.49■□□□□ 0.71
LINC00578-204ENST00000446548 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
LINC00578-204ENST00000446548 PPP4R3CPQ6ZMV5 832 aa18.35■□□□□ 0.53
LINC00578-204ENST00000446548 MAPK8IP2Q13387 824 aaPredicted RBP18.15■□□□□ 0.5
LINC00578-204ENST00000446548 POTEDQ86YR6 584 aa18■□□□□ 0.47
LINC00578-204ENST00000446548 DMRT2Q9Y5R5 561 aa18■□□□□ 0.47
LINC00578-204ENST00000446548 CNKSR2Q8WXI2 1034 aa17.91■□□□□ 0.46
LINC00578-204ENST00000446548 NCBP3Q53F19 620 aaKnown RBP17.9■□□□□ 0.46
LINC00578-204ENST00000446548 KCNA4P22459 653 aa17.67■□□□□ 0.42
LINC00578-204ENST00000446548 RNF216Q9NWF9 866 aaPredicted RBP17.6■□□□□ 0.41
LINC00578-204ENST00000446548 HOXD11P31277 338 aaPredicted RBP17.55■□□□□ 0.4
LINC00578-204ENST00000446548 NPM3O75607 178 aaKnown RBP17.53■□□□□ 0.4
LINC00578-204ENST00000446548 CCDC180Q9P1Z9 1646 aa17.39■□□□□ 0.37
LINC00578-204ENST00000446548 DCAF8L1A6NGE4 600 aa17.29■□□□□ 0.36
LINC00578-204ENST00000446548 DNAJC5BQ9UF47 199 aa17.06■□□□□ 0.32
LINC00578-204ENST00000446548 SLC4A1APQ9BWU0 796 aaKnown RBP16.85■□□□□ 0.29
LINC00578-204ENST00000446548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.78■□□□□ 0.28
LINC00578-204ENST00000446548 ZCCHC6Q5VYS8 1495 aaKnown RBP16.73■□□□□ 0.27
LINC00578-204ENST00000446548 RNF39Q9H2S5 420 aa16.62■□□□□ 0.25
LINC00578-204ENST00000446548 SLC4A2P04920 1241 aa16.56■□□□□ 0.24
LINC00578-204ENST00000446548 C1QBPQ07021 282 aaKnown RBP16.46■□□□□ 0.23
LINC00578-204ENST00000446548 DCAF1Q9Y4B6 1507 aa16.45■□□□□ 0.22
LINC00578-204ENST00000446548 U3KPZ7 1027 aaPredicted RBP16.42■□□□□ 0.22
LINC00578-204ENST00000446548 CACNB1Q02641 598 aaPredicted RBP16.38■□□□□ 0.21
LINC00578-204ENST00000446548 FOXD4L1Q9NU39 408 aa16.37■□□□□ 0.21
LINC00578-204ENST00000446548 ABCC9O60706 1549 aa16.29■□□□□ 0.2
LINC00578-204ENST00000446548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.27■□□□□ 0.2
LINC00578-204ENST00000446548 MYCNP04198 464 aaPredicted RBP16.27■□□□□ 0.2
LINC00578-204ENST00000446548 HNRNPUL2Q1KMD3 747 aaKnown RBP16.27■□□□□ 0.2
LINC00578-204ENST00000446548 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
LINC00578-204ENST00000446548 DCAF8L2P0C7V8 631 aa16.21■□□□□ 0.19
LINC00578-204ENST00000446548 ZBTB22O15209 634 aa16.19■□□□□ 0.18
LINC00578-204ENST00000446548 APLP2Q06481 763 aa16.18■□□□□ 0.18
LINC00578-204ENST00000446548 SHROOM4Q9ULL8 1493 aa16.17■□□□□ 0.18
LINC00578-204ENST00000446548 SAMD1Q6SPF0 538 aaPredicted RBP16.17■□□□□ 0.18
LINC00578-204ENST00000446548 EHMT2Q96KQ7 1210 aa16.13■□□□□ 0.17
LINC00578-204ENST00000446548 NACADO15069 1562 aa16.11■□□□□ 0.17
LINC00578-204ENST00000446548 CAPN15O75808 1086 aa16.03■□□□□ 0.16
LINC00578-204ENST00000446548 SPINK5Q9NQ38 1064 aaPredicted RBP16■□□□□ 0.15
LINC00578-204ENST00000446548 CSRNP3Q8WYN3 585 aa15.99■□□□□ 0.15
LINC00578-204ENST00000446548 RB1CC1Q8TDY2 1594 aa15.96■□□□□ 0.14
LINC00578-204ENST00000446548 SCRIBQ14160 1630 aa15.95■□□□□ 0.14
LINC00578-204ENST00000446548 ZNF219Q9P2Y4 722 aaPredicted RBP15.92■□□□□ 0.14
LINC00578-204ENST00000446548 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
LINC00578-204ENST00000446548 ATXN8OSP0DMR3 200 aa15.84■□□□□ 0.13
LINC00578-204ENST00000446548 UNC13AQ9UPW8 1703 aa15.78■□□□□ 0.12
LINC00578-204ENST00000446548 DSG3P32926 999 aa15.74■□□□□ 0.11
LINC00578-204ENST00000446548 ATF5Q9Y2D1 282 aaPredicted RBP15.73■□□□□ 0.11
LINC00578-204ENST00000446548 ABCB7O75027 752 aa15.66■□□□□ 0.1
LINC00578-204ENST00000446548 POLA2Q14181 598 aa15.58■□□□□ 0.08
LINC00578-204ENST00000446548 BICRAQ9NZM4 1560 aa15.54■□□□□ 0.08
LINC00578-204ENST00000446548 SUPT5HO00267 1087 aaKnown RBP15.53■□□□□ 0.08
LINC00578-204ENST00000446548 CECR2Q9BXF3 1484 aa15.44■□□□□ 0.06
LINC00578-204ENST00000446548 RSF1Q96T23 1441 aaPredicted RBP15.42■□□□□ 0.06
LINC00578-204ENST00000446548 ZBTB12Q9Y330 459 aaPredicted RBP15.39■□□□□ 0.05
LINC00578-204ENST00000446548 MROH2BQ7Z745 1585 aa15.37■□□□□ 0.05
LINC00578-204ENST00000446548 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.05
LINC00578-204ENST00000446548 PABPN1Q86U42 306 aaKnown RBP eCLIP15.31■□□□□ 0.04
LINC00578-204ENST00000446548 SMARCA4P51532 1647 aa15.31■□□□□ 0.04
LINC00578-204ENST00000446548 WIZO95785 1651 aa15.28■□□□□ 0.04
LINC00578-204ENST00000446548 FBLN2P98095 1184 aa15.25■□□□□ 0.03
LINC00578-204ENST00000446548 PEG3Q9GZU2 1588 aa15.12■□□□□ 0.01
LINC00578-204ENST00000446548 RBM42Q9BTD8 480 aaKnown RBP15.12■□□□□ 0.01
LINC00578-204ENST00000446548 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
LINC00578-204ENST00000446548 MKRN4PQ13434 485 aaPredicted RBP15.04■□□□□ -0
LINC00578-204ENST00000446548 OSCARQ8IYS5 282 aa15.04■□□□□ -0
LINC00578-204ENST00000446548 EIF4G1Q04637 1599 aaKnown RBP15.02■□□□□ -0
LINC00578-204ENST00000446548 ATAD2BQ9ULI0 1458 aa14.99□□□□□ -0.01
LINC00578-204ENST00000446548 SMARCA2P51531 1590 aa14.98□□□□□ -0.01
LINC00578-204ENST00000446548 CCDC88BA6NC98 1476 aa14.91□□□□□ -0.02
LINC00578-204ENST00000446548 SPDYE2BA6NHP3 402 aa14.91□□□□□ -0.02
LINC00578-204ENST00000446548 SPDYE6P0CI01 402 aa14.91□□□□□ -0.02
LINC00578-204ENST00000446548 SPDYE2Q495Y8 402 aa14.91□□□□□ -0.02
LINC00578-204ENST00000446548 BAZ1BQ9UIG0 1483 aaKnown RBP14.89□□□□□ -0.03
LINC00578-204ENST00000446548 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
LINC00578-204ENST00000446548 NCAPD3P42695 1498 aa14.84□□□□□ -0.03
LINC00578-204ENST00000446548 AKT1S1Q96B36 256 aa14.84□□□□□ -0.03
LINC00578-204ENST00000446548 ZNF692Q9BU19 519 aaPredicted RBP14.82□□□□□ -0.04
LINC00578-204ENST00000446548 CC2D2AQ9P2K1 1620 aa14.79□□□□□ -0.04
LINC00578-204ENST00000446548 SSUH2Q9Y2M2 353 aa14.72□□□□□ -0.05
LINC00578-204ENST00000446548 SPDYE4A6NLX3 237 aa14.7□□□□□ -0.06
LINC00578-204ENST00000446548 REM2Q8IYK8 340 aaPredicted RBP14.66□□□□□ -0.06
LINC00578-204ENST00000446548 ABCC8Q09428 1581 aa14.64□□□□□ -0.07
LINC00578-204ENST00000446548 PRDM2Q13029 1718 aa14.61□□□□□ -0.07
LINC00578-204ENST00000446548 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
LINC00578-204ENST00000446548 SPDYE1Q8NFV5 336 aaPredicted RBP14.54□□□□□ -0.08
LINC00578-204ENST00000446548 CFTRP13569 1480 aa14.53□□□□□ -0.08
LINC00578-204ENST00000446548 FKBP8Q14318 412 aa14.53□□□□□ -0.08
LINC00578-204ENST00000446548 SYNJ1O43426 1573 aa14.51□□□□□ -0.09
LINC00578-204ENST00000446548 CHRDL2Q6WN34 429 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms