RNA–Protein interactions for RNA: ENST00000440652.5

UBE2D4-203, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 2

Gene UBE2D4, Length 1,299 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-203ENST00000440652 AEBP2Q6ZN18 517 aaPredicted RBP25.05■■□□□ 1.6
UBE2D4-203ENST00000440652 CHIC1Q5VXU3 224 aa24.01■■□□□ 1.43
UBE2D4-203ENST00000440652 SENP3Q9H4L4 574 aaPredicted RBP21.26■□□□□ 0.99
UBE2D4-203ENST00000440652 PHF23Q9BUL5 403 aaPredicted RBP21.11■□□□□ 0.97
UBE2D4-203ENST00000440652 FOXD1Q16676 465 aa19.81■□□□□ 0.76
UBE2D4-203ENST00000440652 PLPPR3Q6T4P5 718 aa19.26■□□□□ 0.67
UBE2D4-203ENST00000440652 PPP6R1Q9UPN7 881 aa18.75■□□□□ 0.59
UBE2D4-203ENST00000440652 ADRA2BP18089 450 aa18.68■□□□□ 0.58
UBE2D4-203ENST00000440652 PIAS4Q8N2W9 510 aaPredicted RBP18.52■□□□□ 0.56
UBE2D4-203ENST00000440652 MSH5O43196 834 aa18.39■□□□□ 0.53
UBE2D4-203ENST00000440652 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
UBE2D4-203ENST00000440652 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
UBE2D4-203ENST00000440652 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
UBE2D4-203ENST00000440652 PPP4R3CPQ6ZMV5 832 aa16.93■□□□□ 0.3
UBE2D4-203ENST00000440652 DMRT2Q9Y5R5 561 aa16.93■□□□□ 0.3
UBE2D4-203ENST00000440652 NISCHQ9Y2I1 1504 aa16.87■□□□□ 0.29
UBE2D4-203ENST00000440652 CNKSR2Q8WXI2 1034 aa16.55■□□□□ 0.24
UBE2D4-203ENST00000440652 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
UBE2D4-203ENST00000440652 RNF216Q9NWF9 866 aaPredicted RBP16.35■□□□□ 0.21
UBE2D4-203ENST00000440652 NCBP3Q53F19 620 aaKnown RBP16.32■□□□□ 0.2
UBE2D4-203ENST00000440652 NPM3O75607 178 aaKnown RBP16.14■□□□□ 0.17
UBE2D4-203ENST00000440652 DCAF8L1A6NGE4 600 aa16.09■□□□□ 0.17
UBE2D4-203ENST00000440652 KCNA4P22459 653 aa16.07■□□□□ 0.16
UBE2D4-203ENST00000440652 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
UBE2D4-203ENST00000440652 RNF39Q9H2S5 420 aa15.77■□□□□ 0.12
UBE2D4-203ENST00000440652 ABCC9O60706 1549 aa15.66■□□□□ 0.1
UBE2D4-203ENST00000440652 CACNB1Q02641 598 aaPredicted RBP15.59■□□□□ 0.09
UBE2D4-203ENST00000440652 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.56■□□□□ 0.08
UBE2D4-203ENST00000440652 C1QBPQ07021 282 aaKnown RBP15.52■□□□□ 0.08
UBE2D4-203ENST00000440652 SLC4A2P04920 1241 aa15.38■□□□□ 0.05
UBE2D4-203ENST00000440652 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
UBE2D4-203ENST00000440652 CCDC180Q9P1Z9 1646 aa15.28■□□□□ 0.04
UBE2D4-203ENST00000440652 SLC4A1APQ9BWU0 796 aaKnown RBP15.19■□□□□ 0.02
UBE2D4-203ENST00000440652 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
UBE2D4-203ENST00000440652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.93□□□□□ -0.02
UBE2D4-203ENST00000440652 HNRNPUL2Q1KMD3 747 aaKnown RBP14.93□□□□□ -0.02
UBE2D4-203ENST00000440652 CAPN15O75808 1086 aa14.9□□□□□ -0.02
UBE2D4-203ENST00000440652 MYCNP04198 464 aaPredicted RBP14.9□□□□□ -0.02
UBE2D4-203ENST00000440652 FOXD4L1Q9NU39 408 aa14.89□□□□□ -0.03
UBE2D4-203ENST00000440652 SAMD1Q6SPF0 538 aaPredicted RBP14.88□□□□□ -0.03
UBE2D4-203ENST00000440652 APLP2Q06481 763 aa14.85□□□□□ -0.03
UBE2D4-203ENST00000440652 DSG3P32926 999 aa14.84□□□□□ -0.03
UBE2D4-203ENST00000440652 ZBTB22O15209 634 aa14.82□□□□□ -0.04
UBE2D4-203ENST00000440652 ZNF219Q9P2Y4 722 aaPredicted RBP14.75□□□□□ -0.05
UBE2D4-203ENST00000440652 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
UBE2D4-203ENST00000440652 RB1CC1Q8TDY2 1594 aa14.68□□□□□ -0.06
UBE2D4-203ENST00000440652 ABCB7O75027 752 aa14.6□□□□□ -0.07
UBE2D4-203ENST00000440652 ATF5Q9Y2D1 282 aaPredicted RBP14.57□□□□□ -0.08
UBE2D4-203ENST00000440652 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
UBE2D4-203ENST00000440652 NACADO15069 1562 aa14.47□□□□□ -0.09
UBE2D4-203ENST00000440652 POLA2Q14181 598 aa14.44□□□□□ -0.1
UBE2D4-203ENST00000440652 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
UBE2D4-203ENST00000440652 ATXN8OSP0DMR3 200 aa14.43□□□□□ -0.1
UBE2D4-203ENST00000440652 DCAF8L2P0C7V8 631 aa14.4□□□□□ -0.1
UBE2D4-203ENST00000440652 CSRNP3Q8WYN3 585 aa14.36□□□□□ -0.11
UBE2D4-203ENST00000440652 BICRAQ9NZM4 1560 aa14.32□□□□□ -0.12
UBE2D4-203ENST00000440652 EHMT2Q96KQ7 1210 aa14.22□□□□□ -0.13
UBE2D4-203ENST00000440652 ZBTB12Q9Y330 459 aaPredicted RBP14.16□□□□□ -0.14
UBE2D4-203ENST00000440652 MYO15BQ96JP2 1530 aa14.11□□□□□ -0.15
UBE2D4-203ENST00000440652 CC2D2AQ9P2K1 1620 aa14.11□□□□□ -0.15
UBE2D4-203ENST00000440652 RBM42Q9BTD8 480 aaKnown RBP14.1□□□□□ -0.15
UBE2D4-203ENST00000440652 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
UBE2D4-203ENST00000440652 SCRIBQ14160 1630 aa14.02□□□□□ -0.16
UBE2D4-203ENST00000440652 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
UBE2D4-203ENST00000440652 SHROOM4Q9ULL8 1493 aa13.98□□□□□ -0.17
UBE2D4-203ENST00000440652 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
UBE2D4-203ENST00000440652 ZCCHC6Q5VYS8 1495 aaKnown RBP13.95□□□□□ -0.18
UBE2D4-203ENST00000440652 MKRN4PQ13434 485 aaPredicted RBP13.93□□□□□ -0.18
UBE2D4-203ENST00000440652 FBLN2P98095 1184 aa13.91□□□□□ -0.18
UBE2D4-203ENST00000440652 AKT1S1Q96B36 256 aa13.88□□□□□ -0.19
UBE2D4-203ENST00000440652 DCAF1Q9Y4B6 1507 aa13.85□□□□□ -0.19
UBE2D4-203ENST00000440652 DNAJC5Q9H3Z4 198 aa13.81□□□□□ -0.2
UBE2D4-203ENST00000440652 SPDYE2BA6NHP3 402 aa13.78□□□□□ -0.2
UBE2D4-203ENST00000440652 SPDYE6P0CI01 402 aa13.78□□□□□ -0.2
UBE2D4-203ENST00000440652 SPDYE2Q495Y8 402 aa13.78□□□□□ -0.2
UBE2D4-203ENST00000440652 POTEHQ6S545 545 aa13.77□□□□□ -0.21
UBE2D4-203ENST00000440652 REM2Q8IYK8 340 aaPredicted RBP13.75□□□□□ -0.21
UBE2D4-203ENST00000440652 CHRDL2Q6WN34 429 aa13.71□□□□□ -0.21
UBE2D4-203ENST00000440652 SSUH2Q9Y2M2 353 aa13.66□□□□□ -0.22
UBE2D4-203ENST00000440652 ZNF692Q9BU19 519 aaPredicted RBP13.61□□□□□ -0.23
UBE2D4-203ENST00000440652 PITPNM1O00562 1244 aa13.59□□□□□ -0.23
UBE2D4-203ENST00000440652 CUX2O14529 1486 aa13.53□□□□□ -0.24
UBE2D4-203ENST00000440652 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
UBE2D4-203ENST00000440652 PIP4P2Q8N4L2 257 aa13.47□□□□□ -0.25
UBE2D4-203ENST00000440652 FXR2P51116 673 aaKnown RBP eCLIP13.45□□□□□ -0.26
UBE2D4-203ENST00000440652 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
UBE2D4-203ENST00000440652 NESP48681 1621 aa13.38□□□□□ -0.27
UBE2D4-203ENST00000440652 CLEC11AQ9Y240 323 aa13.35□□□□□ -0.27
UBE2D4-203ENST00000440652 NCAPD3P42695 1498 aa13.35□□□□□ -0.27
UBE2D4-203ENST00000440652 SPDYE4A6NLX3 237 aa13.34□□□□□ -0.27
UBE2D4-203ENST00000440652 ATAD2BQ9ULI0 1458 aa13.32□□□□□ -0.28
UBE2D4-203ENST00000440652 THOC2Q8NI27 1593 aaKnown RBP13.3□□□□□ -0.28
UBE2D4-203ENST00000440652 HMGXB3Q12766 1538 aa13.28□□□□□ -0.28
UBE2D4-203ENST00000440652 SMARCA4P51532 1647 aa13.28□□□□□ -0.28
UBE2D4-203ENST00000440652 SMARCA2P51531 1590 aa13.26□□□□□ -0.29
UBE2D4-203ENST00000440652 TRIM41Q8WV44 630 aa13.22□□□□□ -0.29
UBE2D4-203ENST00000440652 PRKAR2AP13861 404 aaKnown RBP13.21□□□□□ -0.29
UBE2D4-203ENST00000440652 BAZ1BQ9UIG0 1483 aaKnown RBP13.21□□□□□ -0.3
UBE2D4-203ENST00000440652 PRR29P0C7W0 189 aa13.2□□□□□ -0.3
UBE2D4-203ENST00000440652 KIF21AQ7Z4S6 1674 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms