RNA–Protein interactions for RNA: ENST00000437025.6

GABRA1-204, Transcript of gamma-aminobutyric acid type A receptor alpha1 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABRA1, Length 4,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRA1-204ENST00000437025 NISCHQ9Y2I1 1504 aa21.33■■□□□ 1
GABRA1-204ENST00000437025 SHROOM4Q9ULL8 1493 aa18.99■□□□□ 0.63
GABRA1-204ENST00000437025 DCAF8L2P0C7V8 631 aa18.76■□□□□ 0.59
GABRA1-204ENST00000437025 SUPT5HO00267 1087 aaKnown RBP18.7■□□□□ 0.58
GABRA1-204ENST00000437025 ZCCHC6Q5VYS8 1495 aaKnown RBP17.96■□□□□ 0.46
GABRA1-204ENST00000437025 CCDC180Q9P1Z9 1646 aa17.79■□□□□ 0.44
GABRA1-204ENST00000437025 CHIC1Q5VXU3 224 aa17.78■□□□□ 0.44
GABRA1-204ENST00000437025 PCGF6Q9BYE7 350 aa17.58■□□□□ 0.4
GABRA1-204ENST00000437025 MYO15BQ96JP2 1530 aa17.54■□□□□ 0.4
GABRA1-204ENST00000437025 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.4
GABRA1-204ENST00000437025 LOC105371045A0A1W2PR82 267 aa17.51■□□□□ 0.39
GABRA1-204ENST00000437025 FAM9AQ8IZU1 332 aaPredicted RBP17.41■□□□□ 0.38
GABRA1-204ENST00000437025 HRCP23327 699 aa17.27■□□□□ 0.36
GABRA1-204ENST00000437025 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
GABRA1-204ENST00000437025 ABCC9O60706 1549 aa17.24■□□□□ 0.35
GABRA1-204ENST00000437025 SCRIBQ14160 1630 aa17.22■□□□□ 0.35
GABRA1-204ENST00000437025 PPARGC1BQ86YN6 1023 aaKnown RBP17.2■□□□□ 0.34
GABRA1-204ENST00000437025 DCAF1Q9Y4B6 1507 aa17.17■□□□□ 0.34
GABRA1-204ENST00000437025 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
GABRA1-204ENST00000437025 RSF1Q96T23 1441 aaPredicted RBP17.02■□□□□ 0.31
GABRA1-204ENST00000437025 MYT1Q01538 1121 aa16.98■□□□□ 0.31
GABRA1-204ENST00000437025 TRIM26Q12899 539 aaPredicted RBP16.96■□□□□ 0.31
GABRA1-204ENST00000437025 TTBK1Q5TCY1 1321 aaPredicted RBP16.91■□□□□ 0.3
GABRA1-204ENST00000437025 CECR2Q9BXF3 1484 aa16.85■□□□□ 0.29
GABRA1-204ENST00000437025 RB1CC1Q8TDY2 1594 aa16.83■□□□□ 0.28
GABRA1-204ENST00000437025 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
GABRA1-204ENST00000437025 MROH2BQ7Z745 1585 aa16.69■□□□□ 0.26
GABRA1-204ENST00000437025 NACADO15069 1562 aa16.65■□□□□ 0.26
GABRA1-204ENST00000437025 WIZO95785 1651 aa16.57■□□□□ 0.24
GABRA1-204ENST00000437025 UBTFP17480 764 aaKnown RBP16.57■□□□□ 0.24
GABRA1-204ENST00000437025 RANGAP1P46060 587 aaPredicted RBP16.56■□□□□ 0.24
GABRA1-204ENST00000437025 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
GABRA1-204ENST00000437025 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.55■□□□□ 0.24
GABRA1-204ENST00000437025 CCER1Q8TC90 406 aaPredicted RBP16.54■□□□□ 0.24
GABRA1-204ENST00000437025 BAZ1AQ9NRL2 1556 aaPredicted RBP16.39■□□□□ 0.21
GABRA1-204ENST00000437025 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
GABRA1-204ENST00000437025 SLC24A1O60721 1099 aa16.32■□□□□ 0.2
GABRA1-204ENST00000437025 CCDC88BA6NC98 1476 aa16.31■□□□□ 0.2
GABRA1-204ENST00000437025 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
GABRA1-204ENST00000437025 SOGA1O94964 1423 aa16.29■□□□□ 0.2
GABRA1-204ENST00000437025 HNRNPUL2Q1KMD3 747 aaKnown RBP16.25■□□□□ 0.19
GABRA1-204ENST00000437025 APLP2Q06481 763 aa16.24■□□□□ 0.19
GABRA1-204ENST00000437025 CEP162Q5TB80 1403 aa16.2■□□□□ 0.18
GABRA1-204ENST00000437025 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
GABRA1-204ENST00000437025 SMARCA4P51532 1647 aa16.2■□□□□ 0.18
GABRA1-204ENST00000437025 RUSC2Q8N2Y8 1516 aa16.18■□□□□ 0.18
GABRA1-204ENST00000437025 SMARCA2P51531 1590 aa16.13■□□□□ 0.17
GABRA1-204ENST00000437025 WRNQ14191 1432 aaPredicted RBP eCLIP16.1■□□□□ 0.17
GABRA1-204ENST00000437025 DIEXFQ68CQ4 756 aaKnown RBP16.08■□□□□ 0.16
GABRA1-204ENST00000437025 TNIKQ9UKE5 1360 aa16.06■□□□□ 0.16
GABRA1-204ENST00000437025 PRKCSHP14314 528 aaPredicted RBP16.06■□□□□ 0.16
GABRA1-204ENST00000437025 YTHDC1Q96MU7 727 aaKnown RBP16.05■□□□□ 0.16
GABRA1-204ENST00000437025 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
GABRA1-204ENST00000437025 GOLGA3Q08378 1498 aa16■□□□□ 0.15
GABRA1-204ENST00000437025 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
GABRA1-204ENST00000437025 BAZ1BQ9UIG0 1483 aaKnown RBP15.99■□□□□ 0.15
GABRA1-204ENST00000437025 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
GABRA1-204ENST00000437025 EIF4G1Q04637 1599 aaKnown RBP15.97■□□□□ 0.15
GABRA1-204ENST00000437025 ITGAEP38570 1179 aa15.97■□□□□ 0.15
GABRA1-204ENST00000437025 EEA1Q15075 1411 aa15.96■□□□□ 0.15
GABRA1-204ENST00000437025 CLIP1P30622 1438 aa15.95■□□□□ 0.14
GABRA1-204ENST00000437025 ATP1B4Q9UN42 357 aaPredicted RBP15.91■□□□□ 0.14
GABRA1-204ENST00000437025 BICRAQ9NZM4 1560 aa15.91■□□□□ 0.14
GABRA1-204ENST00000437025 CENPBP07199 599 aaPredicted RBP15.91■□□□□ 0.14
GABRA1-204ENST00000437025 ATAD2BQ9ULI0 1458 aa15.91■□□□□ 0.14
GABRA1-204ENST00000437025 NEUROD1Q13562 356 aa15.89■□□□□ 0.13
GABRA1-204ENST00000437025 CEP164Q9UPV0 1460 aa15.87■□□□□ 0.13
GABRA1-204ENST00000437025 ZNF316A6NFI3 1004 aaPredicted RBP15.86■□□□□ 0.13
GABRA1-204ENST00000437025 SYNJ1O43426 1573 aa15.84■□□□□ 0.13
GABRA1-204ENST00000437025 ACIN1Q9UKV3 1341 aaKnown RBP15.83■□□□□ 0.13
GABRA1-204ENST00000437025 RAPGEF2Q9Y4G8 1499 aa15.83■□□□□ 0.13
GABRA1-204ENST00000437025 GTF3C3Q9Y5Q9 886 aa15.82■□□□□ 0.12
GABRA1-204ENST00000437025 P3H3Q8IVL6 736 aa15.76■□□□□ 0.11
GABRA1-204ENST00000437025 VPS8Q8N3P4 1428 aa15.74■□□□□ 0.11
GABRA1-204ENST00000437025 KANK4Q5T7N3 995 aaPredicted RBP15.72■□□□□ 0.11
GABRA1-204ENST00000437025 MIER1Q8N108 512 aa15.71■□□□□ 0.1
GABRA1-204ENST00000437025 FAM50AQ14320 339 aaKnown RBP15.64■□□□□ 0.09
GABRA1-204ENST00000437025 PEG3Q9GZU2 1588 aa15.62■□□□□ 0.09
GABRA1-204ENST00000437025 KIF27Q86VH2 1401 aa15.62■□□□□ 0.09
GABRA1-204ENST00000437025 KIF21BO75037 1637 aa15.59■□□□□ 0.09
GABRA1-204ENST00000437025 CUX2O14529 1486 aa15.54■□□□□ 0.08
GABRA1-204ENST00000437025 TOP2BQ02880 1626 aa15.52■□□□□ 0.08
GABRA1-204ENST00000437025 CUX1P39880 1505 aa15.5■□□□□ 0.07
GABRA1-204ENST00000437025 BCL11AQ9H165 835 aa15.49■□□□□ 0.07
GABRA1-204ENST00000437025 ARAP1Q96P48 1450 aa15.49■□□□□ 0.07
GABRA1-204ENST00000437025 NCAPD3P42695 1498 aa15.49■□□□□ 0.07
GABRA1-204ENST00000437025 PRXQ9BXM0 1461 aa15.46■□□□□ 0.07
GABRA1-204ENST00000437025 CARMIL1Q5VZK9 1371 aa15.45■□□□□ 0.06
GABRA1-204ENST00000437025 CCNB3Q8WWL7 1395 aa15.44■□□□□ 0.06
GABRA1-204ENST00000437025 DHX57Q6P158 1386 aaKnown RBP15.44■□□□□ 0.06
GABRA1-204ENST00000437025 ARID3CA6NKF2 412 aa15.43■□□□□ 0.06
GABRA1-204ENST00000437025 HIRIP3Q9BW71 556 aaPredicted RBP15.42■□□□□ 0.06
GABRA1-204ENST00000437025 CFTRP13569 1480 aa15.41■□□□□ 0.06
GABRA1-204ENST00000437025 IGF1RP08069 1367 aa15.4■□□□□ 0.06
GABRA1-204ENST00000437025 CADPSQ9ULU8 1353 aa15.4■□□□□ 0.06
GABRA1-204ENST00000437025 SIN3AQ96ST3 1273 aa15.39■□□□□ 0.05
GABRA1-204ENST00000437025 ARHGAP35Q9NRY4 1499 aa15.37■□□□□ 0.05
GABRA1-204ENST00000437025 HMGXB3Q12766 1538 aa15.36■□□□□ 0.05
GABRA1-204ENST00000437025 ERICH3Q5RHP9 1530 aa15.36■□□□□ 0.05
GABRA1-204ENST00000437025 FGD5Q6ZNL6 1462 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms