RNA–Protein interactions for RNA: ENST00000433224.1

LRRTM1-206, Transcript of leucine rich repeat transmembrane neuronal 1, humanhuman

TSL 1 (best)

Gene LRRTM1, Length 4,023 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM1-206ENST00000433224 NISCHQ9Y2I1 1504 aa23.41■■□□□ 1.34
LRRTM1-206ENST00000433224 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
LRRTM1-206ENST00000433224 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
LRRTM1-206ENST00000433224 SUPT5HO00267 1087 aaKnown RBP21.8■■□□□ 1.08
LRRTM1-206ENST00000433224 EHMT2Q96KQ7 1210 aa20.95■□□□□ 0.94
LRRTM1-206ENST00000433224 FAM9AQ8IZU1 332 aaPredicted RBP20.5■□□□□ 0.87
LRRTM1-206ENST00000433224 ABCC9O60706 1549 aa20.12■□□□□ 0.81
LRRTM1-206ENST00000433224 TTBK1Q5TCY1 1321 aaPredicted RBP20.1■□□□□ 0.81
LRRTM1-206ENST00000433224 TRIM41Q8WV44 630 aa20.02■□□□□ 0.79
LRRTM1-206ENST00000433224 RANGAP1P46060 587 aaPredicted RBP19.98■□□□□ 0.79
LRRTM1-206ENST00000433224 PCGF6Q9BYE7 350 aa19.97■□□□□ 0.79
LRRTM1-206ENST00000433224 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
LRRTM1-206ENST00000433224 LOC105371045A0A1W2PR82 267 aa19.78■□□□□ 0.76
LRRTM1-206ENST00000433224 CHIC1Q5VXU3 224 aa19.77■□□□□ 0.76
LRRTM1-206ENST00000433224 PPARGC1BQ86YN6 1023 aaKnown RBP19.74■□□□□ 0.75
LRRTM1-206ENST00000433224 UBTFP17480 764 aaKnown RBP19.59■□□□□ 0.73
LRRTM1-206ENST00000433224 APLP2Q06481 763 aa19.54■□□□□ 0.72
LRRTM1-206ENST00000433224 HRCP23327 699 aa19.47■□□□□ 0.71
LRRTM1-206ENST00000433224 ZCCHC6Q5VYS8 1495 aaKnown RBP19.43■□□□□ 0.7
LRRTM1-206ENST00000433224 ATP1B4Q9UN42 357 aaPredicted RBP19.42■□□□□ 0.7
LRRTM1-206ENST00000433224 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
LRRTM1-206ENST00000433224 CCER1Q8TC90 406 aaPredicted RBP19.16■□□□□ 0.66
LRRTM1-206ENST00000433224 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
LRRTM1-206ENST00000433224 TRIM26Q12899 539 aaPredicted RBP19.02■□□□□ 0.63
LRRTM1-206ENST00000433224 ZEB1P37275 1124 aaPredicted RBP19■□□□□ 0.63
LRRTM1-206ENST00000433224 ITGAEP38570 1179 aa18.99■□□□□ 0.63
LRRTM1-206ENST00000433224 HNRNPUL2Q1KMD3 747 aaKnown RBP18.92■□□□□ 0.62
LRRTM1-206ENST00000433224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.79■□□□□ 0.6
LRRTM1-206ENST00000433224 PELP1Q8IZL8 1130 aaKnown RBP18.79■□□□□ 0.6
LRRTM1-206ENST00000433224 CENPBP07199 599 aaPredicted RBP18.76■□□□□ 0.59
LRRTM1-206ENST00000433224 RSF1Q96T23 1441 aaPredicted RBP18.75■□□□□ 0.59
LRRTM1-206ENST00000433224 YTHDC1Q96MU7 727 aaKnown RBP18.7■□□□□ 0.58
LRRTM1-206ENST00000433224 MYO15BQ96JP2 1530 aa18.69■□□□□ 0.58
LRRTM1-206ENST00000433224 CECR2Q9BXF3 1484 aa18.68■□□□□ 0.58
LRRTM1-206ENST00000433224 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
LRRTM1-206ENST00000433224 P3H3Q8IVL6 736 aa18.65■□□□□ 0.58
LRRTM1-206ENST00000433224 RB1CC1Q8TDY2 1594 aa18.59■□□□□ 0.57
LRRTM1-206ENST00000433224 ARID3CA6NKF2 412 aa18.56■□□□□ 0.56
LRRTM1-206ENST00000433224 FBLN2P98095 1184 aa18.55■□□□□ 0.56
LRRTM1-206ENST00000433224 NACADO15069 1562 aa18.51■□□□□ 0.55
LRRTM1-206ENST00000433224 FAM50AQ14320 339 aaKnown RBP18.47■□□□□ 0.55
LRRTM1-206ENST00000433224 DCAF1Q9Y4B6 1507 aa18.41■□□□□ 0.54
LRRTM1-206ENST00000433224 CNGB1Q14028 1251 aaPredicted RBP18.36■□□□□ 0.53
LRRTM1-206ENST00000433224 DIEXFQ68CQ4 756 aaKnown RBP18.34■□□□□ 0.53
LRRTM1-206ENST00000433224 MYT1LQ9UL68 1186 aa18.34■□□□□ 0.53
LRRTM1-206ENST00000433224 MROH2BQ7Z745 1585 aa18.34■□□□□ 0.53
LRRTM1-206ENST00000433224 POLR3GLQ9BT43 218 aa18.26■□□□□ 0.51
LRRTM1-206ENST00000433224 GTF3C3Q9Y5Q9 886 aa18.26■□□□□ 0.51
LRRTM1-206ENST00000433224 NEUROD1Q13562 356 aa18.25■□□□□ 0.51
LRRTM1-206ENST00000433224 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
LRRTM1-206ENST00000433224 BAZ1AQ9NRL2 1556 aaPredicted RBP18.16■□□□□ 0.5
LRRTM1-206ENST00000433224 TRIM52Q96A61 297 aa18.15■□□□□ 0.5
LRRTM1-206ENST00000433224 SCAF1Q9H7N4 1312 aaKnown RBP18.15■□□□□ 0.5
LRRTM1-206ENST00000433224 WRNQ14191 1432 aaPredicted RBP eCLIP18.13■□□□□ 0.49
LRRTM1-206ENST00000433224 ACIN1Q9UKV3 1341 aaKnown RBP18.11■□□□□ 0.49
LRRTM1-206ENST00000433224 MYT1Q01538 1121 aa18.09■□□□□ 0.49
LRRTM1-206ENST00000433224 SOGA1O94964 1423 aa18.09■□□□□ 0.49
LRRTM1-206ENST00000433224 WIZO95785 1651 aa18.07■□□□□ 0.48
LRRTM1-206ENST00000433224 CCDC88BA6NC98 1476 aa18.06■□□□□ 0.48
LRRTM1-206ENST00000433224 ABCC8Q09428 1581 aa18.05■□□□□ 0.48
LRRTM1-206ENST00000433224 ZNF777Q9ULD5 760 aaPredicted RBP18.05■□□□□ 0.48
LRRTM1-206ENST00000433224 CLIP1P30622 1438 aa17.99■□□□□ 0.47
LRRTM1-206ENST00000433224 ZNF326Q5BKZ1 582 aaKnown RBP17.98■□□□□ 0.47
LRRTM1-206ENST00000433224 CEP162Q5TB80 1403 aa17.98■□□□□ 0.47
LRRTM1-206ENST00000433224 CHIC2Q9UKJ5 165 aa17.94■□□□□ 0.46
LRRTM1-206ENST00000433224 ZNF316A6NFI3 1004 aaPredicted RBP17.9■□□□□ 0.46
LRRTM1-206ENST00000433224 NEFLP07196 543 aa17.89■□□□□ 0.45
LRRTM1-206ENST00000433224 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
LRRTM1-206ENST00000433224 ERICH6Q7L0X2 663 aa17.85■□□□□ 0.45
LRRTM1-206ENST00000433224 GOLGA3Q08378 1498 aa17.83■□□□□ 0.45
LRRTM1-206ENST00000433224 KIF27Q86VH2 1401 aa17.79■□□□□ 0.44
LRRTM1-206ENST00000433224 TNIKQ9UKE5 1360 aa17.78■□□□□ 0.44
LRRTM1-206ENST00000433224 ATAD2BQ9ULI0 1458 aa17.77■□□□□ 0.44
LRRTM1-206ENST00000433224 RUSC2Q8N2Y8 1516 aa17.77■□□□□ 0.43
LRRTM1-206ENST00000433224 BCANQ96GW7 911 aa17.76■□□□□ 0.43
LRRTM1-206ENST00000433224 HIRIP3Q9BW71 556 aaPredicted RBP17.76■□□□□ 0.43
LRRTM1-206ENST00000433224 EEA1Q15075 1411 aa17.75■□□□□ 0.43
LRRTM1-206ENST00000433224 CUX2O14529 1486 aa17.74■□□□□ 0.43
LRRTM1-206ENST00000433224 SLC4A1APQ9BWU0 796 aaKnown RBP17.73■□□□□ 0.43
LRRTM1-206ENST00000433224 MTUS2Q5JR59 1369 aa17.72■□□□□ 0.43
LRRTM1-206ENST00000433224 TDRD9Q8NDG6 1382 aaKnown RBP17.71■□□□□ 0.43
LRRTM1-206ENST00000433224 CDK11AQ9UQ88 783 aaPredicted RBP17.71■□□□□ 0.43
LRRTM1-206ENST00000433224 TOP2AP11388 1531 aaKnown RBP17.71■□□□□ 0.43
LRRTM1-206ENST00000433224 SMARCA4P51532 1647 aa17.71■□□□□ 0.43
LRRTM1-206ENST00000433224 RRP7BPQ9NSQ0 103 aa17.7■□□□□ 0.42
LRRTM1-206ENST00000433224 CEP164Q9UPV0 1460 aa17.7■□□□□ 0.42
LRRTM1-206ENST00000433224 KANK4Q5T7N3 995 aaPredicted RBP17.66■□□□□ 0.42
LRRTM1-206ENST00000433224 CARMIL1Q5VZK9 1371 aa17.66■□□□□ 0.42
LRRTM1-206ENST00000433224 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
LRRTM1-206ENST00000433224 KCNH8Q96L42 1107 aa17.65■□□□□ 0.42
LRRTM1-206ENST00000433224 MIER1Q8N108 512 aa17.63■□□□□ 0.41
LRRTM1-206ENST00000433224 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.62■□□□□ 0.41
LRRTM1-206ENST00000433224 ERCC6Q03468 1493 aa17.61■□□□□ 0.41
LRRTM1-206ENST00000433224 DDX10Q13206 875 aaKnown RBP17.59■□□□□ 0.41
LRRTM1-206ENST00000433224 CADPSQ9ULU8 1353 aa17.58■□□□□ 0.4
LRRTM1-206ENST00000433224 SENP3Q9H4L4 574 aaPredicted RBP17.56■□□□□ 0.4
LRRTM1-206ENST00000433224 DNAJC5BQ9UF47 199 aa17.54■□□□□ 0.4
LRRTM1-206ENST00000433224 RAPGEF2Q9Y4G8 1499 aa17.52■□□□□ 0.4
LRRTM1-206ENST00000433224 TONSLQ96HA7 1378 aa17.52■□□□□ 0.39
LRRTM1-206ENST00000433224 SIN3AQ96ST3 1273 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms