RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 NISCHQ9Y2I1 1504 aa4.7□□□□□ -1.66
CHD9-202ENST00000398510 FAM9AQ8IZU1 332 aaPredicted RBP4.58□□□□□ -1.68
CHD9-202ENST00000398510 CCDC180Q9P1Z9 1646 aa4.43□□□□□ -1.7
CHD9-202ENST00000398510 PELP1Q8IZL8 1130 aaKnown RBP4.4□□□□□ -1.7
CHD9-202ENST00000398510 DCAF8L2P0C7V8 631 aa4.33□□□□□ -1.72
CHD9-202ENST00000398510 CHIC1Q5VXU3 224 aa4.31□□□□□ -1.72
CHD9-202ENST00000398510 APLP2Q06481 763 aa4.26□□□□□ -1.73
CHD9-202ENST00000398510 CCER1Q8TC90 406 aaPredicted RBP4.16□□□□□ -1.74
CHD9-202ENST00000398510 RB1CC1Q8TDY2 1594 aa4.11□□□□□ -1.75
CHD9-202ENST00000398510 YTHDC1Q96MU7 727 aaKnown RBP4.09□□□□□ -1.76
CHD9-202ENST00000398510 NACADO15069 1562 aa4.05□□□□□ -1.76
CHD9-202ENST00000398510 ZEB1P37275 1124 aaPredicted RBP4.02□□□□□ -1.77
CHD9-202ENST00000398510 NEFMP07197 916 aa4.02□□□□□ -1.77
CHD9-202ENST00000398510 ACIN1Q9UKV3 1341 aaKnown RBP4.02□□□□□ -1.77
CHD9-202ENST00000398510 MYT1Q01538 1121 aa4□□□□□ -1.77
CHD9-202ENST00000398510 SLC24A1O60721 1099 aa3.99□□□□□ -1.77
CHD9-202ENST00000398510 SUPT5HO00267 1087 aaKnown RBP3.96□□□□□ -1.78
CHD9-202ENST00000398510 CENPBP07199 599 aaPredicted RBP3.94□□□□□ -1.78
CHD9-202ENST00000398510 SHROOM4Q9ULL8 1493 aa3.93□□□□□ -1.78
CHD9-202ENST00000398510 NEFLP07196 543 aa3.93□□□□□ -1.78
CHD9-202ENST00000398510 PRDM2Q13029 1718 aa3.91□□□□□ -1.78
CHD9-202ENST00000398510 DAXXQ9UER7 740 aaPredicted RBP3.91□□□□□ -1.78
CHD9-202ENST00000398510 ERICH6Q7L0X2 663 aa3.91□□□□□ -1.78
CHD9-202ENST00000398510 SCRIBQ14160 1630 aa3.9□□□□□ -1.78
CHD9-202ENST00000398510 SMARCA2P51531 1590 aa3.9□□□□□ -1.79
CHD9-202ENST00000398510 TRIM41Q8WV44 630 aa3.9□□□□□ -1.79
CHD9-202ENST00000398510 AEBP2Q6ZN18 517 aaPredicted RBP3.89□□□□□ -1.79
CHD9-202ENST00000398510 MYO15BQ96JP2 1530 aa3.88□□□□□ -1.79
CHD9-202ENST00000398510 DCAF1Q9Y4B6 1507 aa3.88□□□□□ -1.79
CHD9-202ENST00000398510 TTBK1Q5TCY1 1321 aaPredicted RBP3.87□□□□□ -1.79
CHD9-202ENST00000398510 BAZ1AQ9NRL2 1556 aaPredicted RBP3.87□□□□□ -1.79
CHD9-202ENST00000398510 MYT1LQ9UL68 1186 aa3.86□□□□□ -1.79
CHD9-202ENST00000398510 UBTFP17480 764 aaKnown RBP3.86□□□□□ -1.79
CHD9-202ENST00000398510 CDK11AQ9UQ88 783 aaPredicted RBP3.86□□□□□ -1.79
CHD9-202ENST00000398510 ABCC9O60706 1549 aa3.86□□□□□ -1.79
CHD9-202ENST00000398510 ESF1Q9H501 851 aaKnown RBP3.85□□□□□ -1.79
CHD9-202ENST00000398510 ZCCHC6Q5VYS8 1495 aaKnown RBP3.85□□□□□ -1.79
CHD9-202ENST00000398510 ANO8Q9HCE9 1232 aaPredicted RBP3.84□□□□□ -1.8
CHD9-202ENST00000398510 ZBTB47Q9UFB7 747 aaPredicted RBP3.84□□□□□ -1.8
CHD9-202ENST00000398510 BAZ1BQ9UIG0 1483 aaKnown RBP3.83□□□□□ -1.8
CHD9-202ENST00000398510 EIF5BO60841 1220 aaKnown RBP3.83□□□□□ -1.8
CHD9-202ENST00000398510 ATP1B4Q9UN42 357 aaPredicted RBP3.83□□□□□ -1.8
CHD9-202ENST00000398510 ERCC6Q03468 1493 aa3.82□□□□□ -1.8
CHD9-202ENST00000398510 CEP162Q5TB80 1403 aa3.82□□□□□ -1.8
CHD9-202ENST00000398510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.82□□□□□ -1.8
CHD9-202ENST00000398510 HNRNPUL2Q1KMD3 747 aaKnown RBP3.82□□□□□ -1.8
CHD9-202ENST00000398510 CLSPNQ9HAW4 1339 aa3.8□□□□□ -1.8
CHD9-202ENST00000398510 NPM1P06748 294 aaKnown RBP eCLIP3.8□□□□□ -1.8
CHD9-202ENST00000398510 EEA1Q15075 1411 aa3.79□□□□□ -1.8
CHD9-202ENST00000398510 KIF21AQ7Z4S6 1674 aa3.78□□□□□ -1.8
CHD9-202ENST00000398510 ABCC8Q09428 1581 aa3.78□□□□□ -1.8
CHD9-202ENST00000398510 PHF23Q9BUL5 403 aaPredicted RBP3.78□□□□□ -1.8
CHD9-202ENST00000398510 ZNF316A6NFI3 1004 aaPredicted RBP3.76□□□□□ -1.81
CHD9-202ENST00000398510 RSF1Q96T23 1441 aaPredicted RBP3.76□□□□□ -1.81
CHD9-202ENST00000398510 CLIP1P30622 1438 aa3.76□□□□□ -1.81
CHD9-202ENST00000398510 CSRNP3Q8WYN3 585 aa3.75□□□□□ -1.81
CHD9-202ENST00000398510 KAT6BQ8WYB5 2073 aa3.75□□□□□ -1.81
CHD9-202ENST00000398510 UNC13AQ9UPW8 1703 aa3.74□□□□□ -1.81
CHD9-202ENST00000398510 FOXD1Q16676 465 aa3.74□□□□□ -1.81
CHD9-202ENST00000398510 HMGB2P26583 209 aaKnown RBP3.72□□□□□ -1.81
CHD9-202ENST00000398510 AMER1Q5JTC6 1135 aaPredicted RBP3.72□□□□□ -1.81
CHD9-202ENST00000398510 FHAD1B1AJZ9 1412 aa3.72□□□□□ -1.81
CHD9-202ENST00000398510 SCAF1Q9H7N4 1312 aaKnown RBP3.72□□□□□ -1.81
CHD9-202ENST00000398510 CDK11BP21127 795 aaKnown RBP3.72□□□□□ -1.81
CHD9-202ENST00000398510 EIF4G2P78344 907 aaKnown RBP eCLIP3.72□□□□□ -1.81
CHD9-202ENST00000398510 SMARCA4P51532 1647 aa3.71□□□□□ -1.82
CHD9-202ENST00000398510 ANP32BQ92688 251 aaKnown RBP3.71□□□□□ -1.82
CHD9-202ENST00000398510 NPM2Q86SE8 214 aaKnown RBP3.71□□□□□ -1.82
CHD9-202ENST00000398510 GOLGA3Q08378 1498 aa3.71□□□□□ -1.82
CHD9-202ENST00000398510 SLC4A1APQ9BWU0 796 aaKnown RBP3.71□□□□□ -1.82
CHD9-202ENST00000398510 CUL7Q14999 1698 aa3.7□□□□□ -1.82
CHD9-202ENST00000398510 PDS5BQ9NTI5 1447 aa3.7□□□□□ -1.82
CHD9-202ENST00000398510 KANK1Q14678 1352 aa3.7□□□□□ -1.82
CHD9-202ENST00000398510 HDGFP51858 240 aaKnown RBP3.7□□□□□ -1.82
CHD9-202ENST00000398510 CHMP4AQ9BY43 222 aa3.7□□□□□ -1.82
CHD9-202ENST00000398510 UPF2Q9HAU5 1272 aaKnown RBP3.69□□□□□ -1.82
CHD9-202ENST00000398510 ITSN2Q9NZM3 1697 aa3.69□□□□□ -1.82
CHD9-202ENST00000398510 TRIM26Q12899 539 aaPredicted RBP3.69□□□□□ -1.82
CHD9-202ENST00000398510 CHMP4BQ9H444 224 aaKnown RBP3.69□□□□□ -1.82
CHD9-202ENST00000398510 CTTNBP2Q8WZ74 1663 aa3.69□□□□□ -1.82
CHD9-202ENST00000398510 ARID4BQ4LE39 1312 aaPredicted RBP3.69□□□□□ -1.82
CHD9-202ENST00000398510 STAG3Q9UJ98 1225 aa3.68□□□□□ -1.82
CHD9-202ENST00000398510 PRKCSHP14314 528 aaPredicted RBP3.68□□□□□ -1.82
CHD9-202ENST00000398510 RTL5Q5HYW3 569 aaPredicted RBP3.68□□□□□ -1.82
CHD9-202ENST00000398510 NCBP3Q53F19 620 aaKnown RBP3.68□□□□□ -1.82
CHD9-202ENST00000398510 BCANQ96GW7 911 aa3.68□□□□□ -1.82
CHD9-202ENST00000398510 EHMT2Q96KQ7 1210 aa3.68□□□□□ -1.82
CHD9-202ENST00000398510 KIF27Q86VH2 1401 aa3.68□□□□□ -1.82
CHD9-202ENST00000398510 CARMIL2Q6F5E8 1435 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 TOP2AP11388 1531 aaKnown RBP3.67□□□□□ -1.82
CHD9-202ENST00000398510 CDCA8Q53HL2 280 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 CEP164Q9UPV0 1460 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 EIF3AQ14152 1382 aaKnown RBP3.67□□□□□ -1.82
CHD9-202ENST00000398510 CFAP74Q9C0B2 1584 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 WDR97A6NE52 1622 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 CANXP27824 592 aaKnown RBP3.67□□□□□ -1.82
CHD9-202ENST00000398510 MYH16Q9H6N6 1097 aa3.67□□□□□ -1.82
CHD9-202ENST00000398510 HAP1P54257 671 aaPredicted RBP3.66□□□□□ -1.82
CHD9-202ENST00000398510 FBLN2P98095 1184 aa3.66□□□□□ -1.82
CHD9-202ENST00000398510 CCDC18Q5T9S5 1454 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms