RNA–Protein interactions for RNA: ENST00000390400.2

TRBV28-201, Transcript of T cell receptor beta variable 28, humanhuman

APPRIS P1 BASIC

Gene TRBV28, Length 364 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV28-201ENST00000390400 AEBP2Q6ZN18 517 aaPredicted RBP22.61■■□□□ 1.21
TRBV28-201ENST00000390400 CHIC1Q5VXU3 224 aa22.58■■□□□ 1.21
TRBV28-201ENST00000390400 PHF23Q9BUL5 403 aaPredicted RBP20.12■□□□□ 0.81
TRBV28-201ENST00000390400 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
TRBV28-201ENST00000390400 PLPPR3Q6T4P5 718 aa18.53■□□□□ 0.56
TRBV28-201ENST00000390400 ADRA2BP18089 450 aa17.64■□□□□ 0.41
TRBV28-201ENST00000390400 PPP6R1Q9UPN7 881 aa17.54■□□□□ 0.4
TRBV28-201ENST00000390400 FOXD1Q16676 465 aa17.53■□□□□ 0.4
TRBV28-201ENST00000390400 KCNA4P22459 653 aa17.04■□□□□ 0.32
TRBV28-201ENST00000390400 NISCHQ9Y2I1 1504 aa16.85■□□□□ 0.29
TRBV28-201ENST00000390400 EHMT2Q96KQ7 1210 aa16.65■□□□□ 0.26
TRBV28-201ENST00000390400 PIAS4Q8N2W9 510 aaPredicted RBP16.59■□□□□ 0.25
TRBV28-201ENST00000390400 PPP4R3CPQ6ZMV5 832 aa16.52■□□□□ 0.24
TRBV28-201ENST00000390400 SLC4A1APQ9BWU0 796 aaKnown RBP16.22■□□□□ 0.19
TRBV28-201ENST00000390400 CSRNP3Q8WYN3 585 aa16.2■□□□□ 0.18
TRBV28-201ENST00000390400 NPM3O75607 178 aaKnown RBP16.1■□□□□ 0.17
TRBV28-201ENST00000390400 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
TRBV28-201ENST00000390400 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
TRBV28-201ENST00000390400 ZBTB22O15209 634 aa15.8■□□□□ 0.12
TRBV28-201ENST00000390400 MAPK8IP2Q13387 824 aaPredicted RBP15.73■□□□□ 0.11
TRBV28-201ENST00000390400 SCAF1Q9H7N4 1312 aaKnown RBP15.65■□□□□ 0.1
TRBV28-201ENST00000390400 MSH5O43196 834 aa15.64■□□□□ 0.09
TRBV28-201ENST00000390400 DNAJC5BQ9UF47 199 aa15.41■□□□□ 0.06
TRBV28-201ENST00000390400 RNF216Q9NWF9 866 aaPredicted RBP15.34■□□□□ 0.05
TRBV28-201ENST00000390400 FOXD4L1Q9NU39 408 aa15.32■□□□□ 0.04
TRBV28-201ENST00000390400 DMRT2Q9Y5R5 561 aa15.17■□□□□ 0.02
TRBV28-201ENST00000390400 HOXD11P31277 338 aaPredicted RBP15.15■□□□□ 0.02
TRBV28-201ENST00000390400 SLC4A2P04920 1241 aa15.12■□□□□ 0.01
TRBV28-201ENST00000390400 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
TRBV28-201ENST00000390400 MYCNP04198 464 aaPredicted RBP14.71□□□□□ -0.05
TRBV28-201ENST00000390400 ATXN8OSP0DMR3 200 aa14.65□□□□□ -0.06
TRBV28-201ENST00000390400 ATF5Q9Y2D1 282 aaPredicted RBP14.56□□□□□ -0.08
TRBV28-201ENST00000390400 RTN4Q9NQC3 1192 aaKnown RBP14.55□□□□□ -0.08
TRBV28-201ENST00000390400 FKBP8Q14318 412 aa14.5□□□□□ -0.09
TRBV28-201ENST00000390400 DCAF8L1A6NGE4 600 aa14.43□□□□□ -0.1
TRBV28-201ENST00000390400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.35□□□□□ -0.11
TRBV28-201ENST00000390400 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
TRBV28-201ENST00000390400 AMER1Q5JTC6 1135 aaPredicted RBP14.32□□□□□ -0.12
TRBV28-201ENST00000390400 ABCC9O60706 1549 aa14.29□□□□□ -0.12
TRBV28-201ENST00000390400 SAMD1Q6SPF0 538 aaPredicted RBP14.15□□□□□ -0.14
TRBV28-201ENST00000390400 SLC24A1O60721 1099 aa14.14□□□□□ -0.15
TRBV28-201ENST00000390400 ZCCHC6Q5VYS8 1495 aaKnown RBP14.1□□□□□ -0.15
TRBV28-201ENST00000390400 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.08□□□□□ -0.16
TRBV28-201ENST00000390400 HNRNPUL2Q1KMD3 747 aaKnown RBP14.08□□□□□ -0.16
TRBV28-201ENST00000390400 ZNF219Q9P2Y4 722 aaPredicted RBP14.03□□□□□ -0.16
TRBV28-201ENST00000390400 DCAF8L2P0C7V8 631 aa13.97□□□□□ -0.17
TRBV28-201ENST00000390400 DCAF1Q9Y4B6 1507 aa13.95□□□□□ -0.18
TRBV28-201ENST00000390400 NACADO15069 1562 aa13.92□□□□□ -0.18
TRBV28-201ENST00000390400 MYO15BQ96JP2 1530 aa13.91□□□□□ -0.18
TRBV28-201ENST00000390400 MKRN4PQ13434 485 aaPredicted RBP13.91□□□□□ -0.18
TRBV28-201ENST00000390400 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
TRBV28-201ENST00000390400 SPINK5Q9NQ38 1064 aaPredicted RBP13.79□□□□□ -0.2
TRBV28-201ENST00000390400 SPDYE4A6NLX3 237 aa13.76□□□□□ -0.21
TRBV28-201ENST00000390400 PROM2Q8N271 834 aa13.72□□□□□ -0.21
TRBV28-201ENST00000390400 APLP2Q06481 763 aa13.7□□□□□ -0.22
TRBV28-201ENST00000390400 TRHP20396 242 aaPredicted RBP13.68□□□□□ -0.22
TRBV28-201ENST00000390400 POLA2Q14181 598 aa13.64□□□□□ -0.23
TRBV28-201ENST00000390400 RNF39Q9H2S5 420 aa13.62□□□□□ -0.23
TRBV28-201ENST00000390400 SCRIBQ14160 1630 aa13.61□□□□□ -0.23
TRBV28-201ENST00000390400 FBXO3Q9UK99 471 aa13.58□□□□□ -0.24
TRBV28-201ENST00000390400 UNC13AQ9UPW8 1703 aa13.56□□□□□ -0.24
TRBV28-201ENST00000390400 VASPP50552 380 aaPredicted RBP13.55□□□□□ -0.24
TRBV28-201ENST00000390400 CAPN15O75808 1086 aa13.53□□□□□ -0.24
TRBV28-201ENST00000390400 FBLN2P98095 1184 aa13.53□□□□□ -0.24
TRBV28-201ENST00000390400 IFNLR1Q8IU57 520 aaPredicted RBP13.52□□□□□ -0.25
TRBV28-201ENST00000390400 SHROOM4Q9ULL8 1493 aa13.49□□□□□ -0.25
TRBV28-201ENST00000390400 ABCB7O75027 752 aa13.46□□□□□ -0.25
TRBV28-201ENST00000390400 BICRAQ9NZM4 1560 aa13.42□□□□□ -0.26
TRBV28-201ENST00000390400 PABPN1Q86U42 306 aaKnown RBP eCLIP13.39□□□□□ -0.27
TRBV28-201ENST00000390400 C1QBPQ07021 282 aaKnown RBP13.37□□□□□ -0.27
TRBV28-201ENST00000390400 PKD2Q13563 968 aa13.36□□□□□ -0.27
TRBV28-201ENST00000390400 PLCB2Q00722 1185 aa13.31□□□□□ -0.28
TRBV28-201ENST00000390400 DSG3P32926 999 aa13.23□□□□□ -0.29
TRBV28-201ENST00000390400 ZBTB12Q9Y330 459 aaPredicted RBP13.22□□□□□ -0.29
TRBV28-201ENST00000390400 POTEDQ86YR6 584 aa13.21□□□□□ -0.29
TRBV28-201ENST00000390400 OSCARQ8IYS5 282 aa13.17□□□□□ -0.3
TRBV28-201ENST00000390400 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
TRBV28-201ENST00000390400 SSUH2Q9Y2M2 353 aa13.13□□□□□ -0.31
TRBV28-201ENST00000390400 NPM1P06748 294 aaKnown RBP eCLIP13.1□□□□□ -0.31
TRBV28-201ENST00000390400 HAP1P54257 671 aaPredicted RBP13.1□□□□□ -0.31
TRBV28-201ENST00000390400 SPOCK2Q92563 424 aa13.09□□□□□ -0.31
TRBV28-201ENST00000390400 CECR2Q9BXF3 1484 aa13.09□□□□□ -0.31
TRBV28-201ENST00000390400 KLHL34Q8N239 644 aa13.07□□□□□ -0.32
TRBV28-201ENST00000390400 EIF4G1Q04637 1599 aaKnown RBP13.06□□□□□ -0.32
TRBV28-201ENST00000390400 BAZ1AQ9NRL2 1556 aaPredicted RBP13.06□□□□□ -0.32
TRBV28-201ENST00000390400 SPDYE2BA6NHP3 402 aa13.05□□□□□ -0.32
TRBV28-201ENST00000390400 SPDYE6P0CI01 402 aa13.05□□□□□ -0.32
TRBV28-201ENST00000390400 SPDYE2Q495Y8 402 aa13.05□□□□□ -0.32
TRBV28-201ENST00000390400 SMARCA4P51532 1647 aa13.02□□□□□ -0.32
TRBV28-201ENST00000390400 ECM2O94769 699 aaPredicted RBP13.01□□□□□ -0.33
TRBV28-201ENST00000390400 STAG3Q9UJ98 1225 aa13.01□□□□□ -0.33
TRBV28-201ENST00000390400 RGL2O15211 777 aa12.99□□□□□ -0.33
TRBV28-201ENST00000390400 MROH2BQ7Z745 1585 aa12.98□□□□□ -0.33
TRBV28-201ENST00000390400 PLCD3Q8N3E9 789 aa12.96□□□□□ -0.33
TRBV28-201ENST00000390400 MIER1Q8N108 512 aa12.94□□□□□ -0.34
TRBV28-201ENST00000390400 CC2D2AQ9P2K1 1620 aa12.94□□□□□ -0.34
TRBV28-201ENST00000390400 RSF1Q96T23 1441 aaPredicted RBP12.94□□□□□ -0.34
TRBV28-201ENST00000390400 KDM2AQ9Y2K7 1162 aa12.93□□□□□ -0.34
TRBV28-201ENST00000390400 BBXQ8WY36 941 aaPredicted RBP12.9□□□□□ -0.34
TRBV28-201ENST00000390400 SMARCA2P51531 1590 aa12.9□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms