RNA–Protein interactions for RNA: ENST00000378387.3

ARHGEF39-201, Transcript of Rho guanine nucleotide exchange factor 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ARHGEF39, Length 3,769 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39-201ENST00000378387 NISCHQ9Y2I1 1504 aa18.21■□□□□ 0.5
ARHGEF39-201ENST00000378387 HRCP23327 699 aa17.59■□□□□ 0.41
ARHGEF39-201ENST00000378387 PCGF6Q9BYE7 350 aa17.58■□□□□ 0.41
ARHGEF39-201ENST00000378387 PPARGC1BQ86YN6 1023 aaKnown RBP17.55■□□□□ 0.4
ARHGEF39-201ENST00000378387 SUPT5HO00267 1087 aaKnown RBP17.51■□□□□ 0.39
ARHGEF39-201ENST00000378387 PELP1Q8IZL8 1130 aaKnown RBP17.43■□□□□ 0.38
ARHGEF39-201ENST00000378387 SHROOM4Q9ULL8 1493 aa17.3■□□□□ 0.36
ARHGEF39-201ENST00000378387 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.29
ARHGEF39-201ENST00000378387 MYT1Q01538 1121 aa16.82■□□□□ 0.28
ARHGEF39-201ENST00000378387 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
ARHGEF39-201ENST00000378387 LOC105371045A0A1W2PR82 267 aa16.69■□□□□ 0.26
ARHGEF39-201ENST00000378387 DCAF8L2P0C7V8 631 aa16.65■□□□□ 0.26
ARHGEF39-201ENST00000378387 EHMT2Q96KQ7 1210 aa16.65■□□□□ 0.26
ARHGEF39-201ENST00000378387 TRIM26Q12899 539 aaPredicted RBP16.6■□□□□ 0.25
ARHGEF39-201ENST00000378387 ZEB1P37275 1124 aaPredicted RBP16.56■□□□□ 0.24
ARHGEF39-201ENST00000378387 GTF3C3Q9Y5Q9 886 aa16.51■□□□□ 0.23
ARHGEF39-201ENST00000378387 CENPBP07199 599 aaPredicted RBP16.48■□□□□ 0.23
ARHGEF39-201ENST00000378387 MYO15BQ96JP2 1530 aa16.48■□□□□ 0.23
ARHGEF39-201ENST00000378387 YTHDC1Q96MU7 727 aaKnown RBP16.41■□□□□ 0.22
ARHGEF39-201ENST00000378387 ACIN1Q9UKV3 1341 aaKnown RBP16.41■□□□□ 0.22
ARHGEF39-201ENST00000378387 NEUROD1Q13562 356 aa16.4■□□□□ 0.22
ARHGEF39-201ENST00000378387 FAM9AQ8IZU1 332 aaPredicted RBP16.36■□□□□ 0.21
ARHGEF39-201ENST00000378387 CCER1Q8TC90 406 aaPredicted RBP16.28■□□□□ 0.2
ARHGEF39-201ENST00000378387 TTBK1Q5TCY1 1321 aaPredicted RBP16.22■□□□□ 0.19
ARHGEF39-201ENST00000378387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.18■□□□□ 0.18
ARHGEF39-201ENST00000378387 DIEXFQ68CQ4 756 aaKnown RBP16.18■□□□□ 0.18
ARHGEF39-201ENST00000378387 DCAF1Q9Y4B6 1507 aa16.07■□□□□ 0.16
ARHGEF39-201ENST00000378387 TRIM41Q8WV44 630 aa15.95■□□□□ 0.14
ARHGEF39-201ENST00000378387 BCL11AQ9H165 835 aa15.83■□□□□ 0.12
ARHGEF39-201ENST00000378387 CCDC180Q9P1Z9 1646 aa15.77■□□□□ 0.12
ARHGEF39-201ENST00000378387 ZNF316A6NFI3 1004 aaPredicted RBP15.68■□□□□ 0.1
ARHGEF39-201ENST00000378387 MIER1Q8N108 512 aa15.66■□□□□ 0.1
ARHGEF39-201ENST00000378387 BCANQ96GW7 911 aa15.65■□□□□ 0.1
ARHGEF39-201ENST00000378387 ANP32EQ9BTT0 268 aa15.62■□□□□ 0.09
ARHGEF39-201ENST00000378387 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
ARHGEF39-201ENST00000378387 CSRNP3Q8WYN3 585 aa15.54■□□□□ 0.08
ARHGEF39-201ENST00000378387 HNRNPUL2Q1KMD3 747 aaKnown RBP15.52■□□□□ 0.08
ARHGEF39-201ENST00000378387 SUPT16HQ9Y5B9 1047 aaKnown RBP15.43■□□□□ 0.06
ARHGEF39-201ENST00000378387 TSHZ2Q9NRE2 1034 aa15.39■□□□□ 0.05
ARHGEF39-201ENST00000378387 NEFLP07196 543 aa15.36■□□□□ 0.05
ARHGEF39-201ENST00000378387 RANGAP1P46060 587 aaPredicted RBP15.36■□□□□ 0.05
ARHGEF39-201ENST00000378387 ZCCHC6Q5VYS8 1495 aaKnown RBP15.35■□□□□ 0.05
ARHGEF39-201ENST00000378387 UBTFP17480 764 aaKnown RBP15.33■□□□□ 0.05
ARHGEF39-201ENST00000378387 FKBP8Q14318 412 aa15.29■□□□□ 0.04
ARHGEF39-201ENST00000378387 ITGAEP38570 1179 aa15.27■□□□□ 0.03
ARHGEF39-201ENST00000378387 APLP2Q06481 763 aa15.26■□□□□ 0.03
ARHGEF39-201ENST00000378387 PRKCSHP14314 528 aaPredicted RBP15.23■□□□□ 0.03
ARHGEF39-201ENST00000378387 CLSPNQ9HAW4 1339 aa15.14■□□□□ 0.01
ARHGEF39-201ENST00000378387 RBM19Q9Y4C8 960 aaKnown RBP15.13■□□□□ 0.01
ARHGEF39-201ENST00000378387 TRIM52Q96A61 297 aa15.05■□□□□ -0
ARHGEF39-201ENST00000378387 NBR1Q14596 966 aa15.03■□□□□ -0
ARHGEF39-201ENST00000378387 KCNH8Q96L42 1107 aa15.01□□□□□ -0.01
ARHGEF39-201ENST00000378387 IRX6P78412 446 aaPredicted RBP15□□□□□ -0.01
ARHGEF39-201ENST00000378387 CDK11AQ9UQ88 783 aaPredicted RBP15□□□□□ -0.01
ARHGEF39-201ENST00000378387 DEKP35659 375 aaKnown RBP14.94□□□□□ -0.02
ARHGEF39-201ENST00000378387 DDX10Q13206 875 aaKnown RBP14.94□□□□□ -0.02
ARHGEF39-201ENST00000378387 RTN4Q9NQC3 1192 aaKnown RBP14.93□□□□□ -0.02
ARHGEF39-201ENST00000378387 ANO8Q9HCE9 1232 aaPredicted RBP14.92□□□□□ -0.02
ARHGEF39-201ENST00000378387 RTL5Q5HYW3 569 aaPredicted RBP14.9□□□□□ -0.02
ARHGEF39-201ENST00000378387 CCDC136Q96JN2 1154 aa14.9□□□□□ -0.02
ARHGEF39-201ENST00000378387 HIRIP3Q9BW71 556 aaPredicted RBP14.87□□□□□ -0.03
ARHGEF39-201ENST00000378387 EIF5BO60841 1220 aaKnown RBP14.85□□□□□ -0.03
ARHGEF39-201ENST00000378387 MSH5O43196 834 aa14.82□□□□□ -0.04
ARHGEF39-201ENST00000378387 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.81□□□□□ -0.04
ARHGEF39-201ENST00000378387 CEP162Q5TB80 1403 aa14.8□□□□□ -0.04
ARHGEF39-201ENST00000378387 RSF1Q96T23 1441 aaPredicted RBP14.79□□□□□ -0.04
ARHGEF39-201ENST00000378387 ANP32CO43423 234 aa14.78□□□□□ -0.04
ARHGEF39-201ENST00000378387 CNGB1Q14028 1251 aaPredicted RBP14.77□□□□□ -0.05
ARHGEF39-201ENST00000378387 ABCC9O60706 1549 aa14.76□□□□□ -0.05
ARHGEF39-201ENST00000378387 HNRNPUQ00839 825 aaKnown RBP eCLIP14.74□□□□□ -0.05
ARHGEF39-201ENST00000378387 MYT1LQ9UL68 1186 aa14.74□□□□□ -0.05
ARHGEF39-201ENST00000378387 SALL2Q9Y467 1007 aaPredicted RBP14.73□□□□□ -0.05
ARHGEF39-201ENST00000378387 RB1CC1Q8TDY2 1594 aa14.67□□□□□ -0.06
ARHGEF39-201ENST00000378387 NPM2Q86SE8 214 aaKnown RBP14.67□□□□□ -0.06
ARHGEF39-201ENST00000378387 B4GALNT3Q6L9W6 998 aa14.63□□□□□ -0.07
ARHGEF39-201ENST00000378387 NOP58Q9Y2X3 529 aaKnown RBP14.63□□□□□ -0.07
ARHGEF39-201ENST00000378387 ANP32AP39687 249 aaKnown RBP14.62□□□□□ -0.07
ARHGEF39-201ENST00000378387 ATP1B4Q9UN42 357 aaPredicted RBP14.62□□□□□ -0.07
ARHGEF39-201ENST00000378387 SCRIBQ14160 1630 aa14.61□□□□□ -0.07
ARHGEF39-201ENST00000378387 ZBTB47Q9UFB7 747 aaPredicted RBP14.6□□□□□ -0.07
ARHGEF39-201ENST00000378387 FANCIQ9NVI1 1328 aa14.59□□□□□ -0.07
ARHGEF39-201ENST00000378387 IL27Q8NEV9 243 aa14.58□□□□□ -0.07
ARHGEF39-201ENST00000378387 TNIKQ9UKE5 1360 aa14.56□□□□□ -0.08
ARHGEF39-201ENST00000378387 SENP3-EIF4A1A0A087X0R7 540 aa14.54□□□□□ -0.08
ARHGEF39-201ENST00000378387 SOGA1O94964 1423 aa14.54□□□□□ -0.08
ARHGEF39-201ENST00000378387 FAM9BQ8IZU0 186 aa14.53□□□□□ -0.08
ARHGEF39-201ENST00000378387 SIN3AQ96ST3 1273 aa14.53□□□□□ -0.08
ARHGEF39-201ENST00000378387 LAS1LQ9Y4W2 734 aaKnown RBP14.52□□□□□ -0.08
ARHGEF39-201ENST00000378387 WRNQ14191 1432 aaPredicted RBP eCLIP14.52□□□□□ -0.08
ARHGEF39-201ENST00000378387 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
ARHGEF39-201ENST00000378387 PAK3O75914 559 aaPredicted RBP14.51□□□□□ -0.09
ARHGEF39-201ENST00000378387 FAM50AQ14320 339 aaKnown RBP14.51□□□□□ -0.09
ARHGEF39-201ENST00000378387 PPP4R2Q9NY27 417 aa14.49□□□□□ -0.09
ARHGEF39-201ENST00000378387 POLR3GLQ9BT43 218 aa14.48□□□□□ -0.09
ARHGEF39-201ENST00000378387 DHX57Q6P158 1386 aaKnown RBP14.47□□□□□ -0.09
ARHGEF39-201ENST00000378387 CLIP1P30622 1438 aa14.46□□□□□ -0.09
ARHGEF39-201ENST00000378387 DAXXQ9UER7 740 aaPredicted RBP14.45□□□□□ -0.1
ARHGEF39-201ENST00000378387 NEFMP07197 916 aa14.45□□□□□ -0.1
ARHGEF39-201ENST00000378387 CCDC88BA6NC98 1476 aa14.44□□□□□ -0.1
ARHGEF39-201ENST00000378387 ERICH6BQ5W0A0 696 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms