RNA–Protein interactions for RNA: ENST00000376233.7

ZNF549-202, Transcript of zinc finger protein 549, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF549, Length 4,053 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549-202ENST00000376233 NISCHQ9Y2I1 1504 aa20.54■□□□□ 0.88
ZNF549-202ENST00000376233 DCAF8L2P0C7V8 631 aa18.66■□□□□ 0.58
ZNF549-202ENST00000376233 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
ZNF549-202ENST00000376233 SUPT5HO00267 1087 aaKnown RBP18.45■□□□□ 0.54
ZNF549-202ENST00000376233 EHMT2Q96KQ7 1210 aa17.38■□□□□ 0.37
ZNF549-202ENST00000376233 CHIC1Q5VXU3 224 aa17.33■□□□□ 0.36
ZNF549-202ENST00000376233 PCGF6Q9BYE7 350 aa17.32■□□□□ 0.36
ZNF549-202ENST00000376233 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
ZNF549-202ENST00000376233 FAM9AQ8IZU1 332 aaPredicted RBP17.21■□□□□ 0.35
ZNF549-202ENST00000376233 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
ZNF549-202ENST00000376233 CCDC180Q9P1Z9 1646 aa17.02■□□□□ 0.31
ZNF549-202ENST00000376233 TRIM41Q8WV44 630 aa17.01■□□□□ 0.31
ZNF549-202ENST00000376233 HRCP23327 699 aa16.9■□□□□ 0.3
ZNF549-202ENST00000376233 MYO15BQ96JP2 1530 aa16.84■□□□□ 0.29
ZNF549-202ENST00000376233 PPARGC1BQ86YN6 1023 aaKnown RBP16.8■□□□□ 0.28
ZNF549-202ENST00000376233 ABCC9O60706 1549 aa16.79■□□□□ 0.28
ZNF549-202ENST00000376233 TTBK1Q5TCY1 1321 aaPredicted RBP16.77■□□□□ 0.28
ZNF549-202ENST00000376233 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
ZNF549-202ENST00000376233 SCRIBQ14160 1630 aa16.64■□□□□ 0.25
ZNF549-202ENST00000376233 RANGAP1P46060 587 aaPredicted RBP16.46■□□□□ 0.23
ZNF549-202ENST00000376233 DCAF1Q9Y4B6 1507 aa16.45■□□□□ 0.22
ZNF549-202ENST00000376233 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
ZNF549-202ENST00000376233 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
ZNF549-202ENST00000376233 ZEB1P37275 1124 aaPredicted RBP16.41■□□□□ 0.22
ZNF549-202ENST00000376233 CCER1Q8TC90 406 aaPredicted RBP16.41■□□□□ 0.22
ZNF549-202ENST00000376233 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
ZNF549-202ENST00000376233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.27■□□□□ 0.19
ZNF549-202ENST00000376233 APLP2Q06481 763 aa16.26■□□□□ 0.19
ZNF549-202ENST00000376233 CECR2Q9BXF3 1484 aa16.24■□□□□ 0.19
ZNF549-202ENST00000376233 RB1CC1Q8TDY2 1594 aa16.16■□□□□ 0.18
ZNF549-202ENST00000376233 NACADO15069 1562 aa16.07■□□□□ 0.16
ZNF549-202ENST00000376233 HNRNPUL2Q1KMD3 747 aaKnown RBP16.06■□□□□ 0.16
ZNF549-202ENST00000376233 MROH2BQ7Z745 1585 aa16.06■□□□□ 0.16
ZNF549-202ENST00000376233 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
ZNF549-202ENST00000376233 YTHDC1Q96MU7 727 aaKnown RBP15.94■□□□□ 0.14
ZNF549-202ENST00000376233 WIZO95785 1651 aa15.91■□□□□ 0.14
ZNF549-202ENST00000376233 ATP1B4Q9UN42 357 aaPredicted RBP15.9■□□□□ 0.14
ZNF549-202ENST00000376233 CENPBP07199 599 aaPredicted RBP15.88■□□□□ 0.13
ZNF549-202ENST00000376233 DIEXFQ68CQ4 756 aaKnown RBP15.86■□□□□ 0.13
ZNF549-202ENST00000376233 ITGAEP38570 1179 aa15.85■□□□□ 0.13
ZNF549-202ENST00000376233 BAZ1AQ9NRL2 1556 aaPredicted RBP15.84■□□□□ 0.13
ZNF549-202ENST00000376233 ABCC8Q09428 1581 aa15.8■□□□□ 0.12
ZNF549-202ENST00000376233 SOGA1O94964 1423 aa15.78■□□□□ 0.12
ZNF549-202ENST00000376233 CEP162Q5TB80 1403 aa15.76■□□□□ 0.11
ZNF549-202ENST00000376233 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
ZNF549-202ENST00000376233 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
ZNF549-202ENST00000376233 TNIKQ9UKE5 1360 aa15.63■□□□□ 0.09
ZNF549-202ENST00000376233 ZNF316A6NFI3 1004 aaPredicted RBP15.62■□□□□ 0.09
ZNF549-202ENST00000376233 TOP2AP11388 1531 aaKnown RBP15.6■□□□□ 0.09
ZNF549-202ENST00000376233 SCAF1Q9H7N4 1312 aaKnown RBP15.59■□□□□ 0.09
ZNF549-202ENST00000376233 RUSC2Q8N2Y8 1516 aa15.59■□□□□ 0.09
ZNF549-202ENST00000376233 GTF3C3Q9Y5Q9 886 aa15.59■□□□□ 0.09
ZNF549-202ENST00000376233 CLIP1P30622 1438 aa15.58■□□□□ 0.09
ZNF549-202ENST00000376233 GOLGA3Q08378 1498 aa15.58■□□□□ 0.08
ZNF549-202ENST00000376233 EEA1Q15075 1411 aa15.56■□□□□ 0.08
ZNF549-202ENST00000376233 ACIN1Q9UKV3 1341 aaKnown RBP15.56■□□□□ 0.08
ZNF549-202ENST00000376233 SMARCA4P51532 1647 aa15.56■□□□□ 0.08
ZNF549-202ENST00000376233 BAZ1BQ9UIG0 1483 aaKnown RBP15.55■□□□□ 0.08
ZNF549-202ENST00000376233 NEUROD1Q13562 356 aa15.54■□□□□ 0.08
ZNF549-202ENST00000376233 P3H3Q8IVL6 736 aa15.54■□□□□ 0.08
ZNF549-202ENST00000376233 FAM50AQ14320 339 aaKnown RBP15.5■□□□□ 0.07
ZNF549-202ENST00000376233 PELP1Q8IZL8 1130 aaKnown RBP15.49■□□□□ 0.07
ZNF549-202ENST00000376233 SMARCA2P51531 1590 aa15.48■□□□□ 0.07
ZNF549-202ENST00000376233 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.06
ZNF549-202ENST00000376233 MIER1Q8N108 512 aa15.39■□□□□ 0.05
ZNF549-202ENST00000376233 ATAD2BQ9ULI0 1458 aa15.36■□□□□ 0.05
ZNF549-202ENST00000376233 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
ZNF549-202ENST00000376233 KANK4Q5T7N3 995 aaPredicted RBP15.3■□□□□ 0.04
ZNF549-202ENST00000376233 VPS8Q8N3P4 1428 aa15.3■□□□□ 0.04
ZNF549-202ENST00000376233 KIF27Q86VH2 1401 aa15.27■□□□□ 0.03
ZNF549-202ENST00000376233 ARID3CA6NKF2 412 aa15.26■□□□□ 0.03
ZNF549-202ENST00000376233 SYNJ1O43426 1573 aa15.2■□□□□ 0.02
ZNF549-202ENST00000376233 HIRIP3Q9BW71 556 aaPredicted RBP15.17■□□□□ 0.02
ZNF549-202ENST00000376233 BICRAQ9NZM4 1560 aa15.16■□□□□ 0.02
ZNF549-202ENST00000376233 CUX2O14529 1486 aa15.16■□□□□ 0.02
ZNF549-202ENST00000376233 CNGB1Q14028 1251 aaPredicted RBP15.16■□□□□ 0.02
ZNF549-202ENST00000376233 TRIM52Q96A61 297 aa15.15■□□□□ 0.02
ZNF549-202ENST00000376233 BCANQ96GW7 911 aa15.14■□□□□ 0.01
ZNF549-202ENST00000376233 NEFLP07196 543 aa15.13■□□□□ 0.01
ZNF549-202ENST00000376233 DDX10Q13206 875 aaKnown RBP15.13■□□□□ 0.01
ZNF549-202ENST00000376233 UNC13AQ9UPW8 1703 aa15.12■□□□□ 0.01
ZNF549-202ENST00000376233 EIF4G1Q04637 1599 aaKnown RBP15.11■□□□□ 0.01
ZNF549-202ENST00000376233 CARMIL1Q5VZK9 1371 aa15.1■□□□□ 0.01
ZNF549-202ENST00000376233 CCNB3Q8WWL7 1395 aa15.1■□□□□ 0.01
ZNF549-202ENST00000376233 SIN3AQ96ST3 1273 aa15.09■□□□□ 0.01
ZNF549-202ENST00000376233 POLR3GLQ9BT43 218 aa15.08■□□□□ 0.01
ZNF549-202ENST00000376233 CHIC2Q9UKJ5 165 aa15.06■□□□□ 0
ZNF549-202ENST00000376233 KIF21BO75037 1637 aa15.04■□□□□ -0
ZNF549-202ENST00000376233 ANP32CO43423 234 aa15.02□□□□□ -0.01
ZNF549-202ENST00000376233 FBLN2P98095 1184 aa15.01□□□□□ -0.01
ZNF549-202ENST00000376233 MTUS2Q5JR59 1369 aa15.01□□□□□ -0.01
ZNF549-202ENST00000376233 DHX57Q6P158 1386 aaKnown RBP15□□□□□ -0.01
ZNF549-202ENST00000376233 CADPSQ9ULU8 1353 aa14.99□□□□□ -0.01
ZNF549-202ENST00000376233 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
ZNF549-202ENST00000376233 TONSLQ96HA7 1378 aa14.98□□□□□ -0.01
ZNF549-202ENST00000376233 RAB3GAP2Q9H2M9 1393 aa14.96□□□□□ -0.01
ZNF549-202ENST00000376233 NCAPD3P42695 1498 aa14.96□□□□□ -0.01
ZNF549-202ENST00000376233 RRP7BPQ9NSQ0 103 aa14.96□□□□□ -0.01
ZNF549-202ENST00000376233 ARAP1Q96P48 1450 aa14.95□□□□□ -0.02
ZNF549-202ENST00000376233 IGF1RP08069 1367 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms