RNA–Protein interactions for RNA: ENST00000299267.8

GABRB3-201, Transcript of gamma-aminobutyric acid type A receptor beta3 subunit, humanhuman

TSL 1 (best) BASIC

Gene GABRB3, Length 4,494 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABRB3-201ENST00000299267 NISCHQ9Y2I1 1504 aa19.33■□□□□ 0.69
GABRB3-201ENST00000299267 DCAF8L2P0C7V8 631 aa18.99■□□□□ 0.63
GABRB3-201ENST00000299267 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
GABRB3-201ENST00000299267 SUPT5HO00267 1087 aaKnown RBP17.82■□□□□ 0.44
GABRB3-201ENST00000299267 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
GABRB3-201ENST00000299267 ABCC9O60706 1549 aa16.79■□□□□ 0.28
GABRB3-201ENST00000299267 FAM9AQ8IZU1 332 aaPredicted RBP16.76■□□□□ 0.27
GABRB3-201ENST00000299267 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
GABRB3-201ENST00000299267 TRIM41Q8WV44 630 aa16.42■□□□□ 0.22
GABRB3-201ENST00000299267 RANGAP1P46060 587 aaPredicted RBP16.41■□□□□ 0.22
GABRB3-201ENST00000299267 TTBK1Q5TCY1 1321 aaPredicted RBP16.37■□□□□ 0.21
GABRB3-201ENST00000299267 UBTFP17480 764 aaKnown RBP16.11■□□□□ 0.17
GABRB3-201ENST00000299267 APLP2Q06481 763 aa16.1■□□□□ 0.17
GABRB3-201ENST00000299267 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
GABRB3-201ENST00000299267 PCGF6Q9BYE7 350 aa16.05■□□□□ 0.16
GABRB3-201ENST00000299267 LOC105371045A0A1W2PR82 267 aa16.04■□□□□ 0.16
GABRB3-201ENST00000299267 ATP1B4Q9UN42 357 aaPredicted RBP16.03■□□□□ 0.16
GABRB3-201ENST00000299267 PPARGC1BQ86YN6 1023 aaKnown RBP16.02■□□□□ 0.16
GABRB3-201ENST00000299267 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
GABRB3-201ENST00000299267 CCDC180Q9P1Z9 1646 aa15.93■□□□□ 0.14
GABRB3-201ENST00000299267 SCRIBQ14160 1630 aa15.93■□□□□ 0.14
GABRB3-201ENST00000299267 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
GABRB3-201ENST00000299267 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
GABRB3-201ENST00000299267 CCER1Q8TC90 406 aaPredicted RBP15.55■□□□□ 0.08
GABRB3-201ENST00000299267 ITGAEP38570 1179 aa15.55■□□□□ 0.08
GABRB3-201ENST00000299267 RB1CC1Q8TDY2 1594 aa15.53■□□□□ 0.08
GABRB3-201ENST00000299267 FBLN2P98095 1184 aa15.47■□□□□ 0.07
GABRB3-201ENST00000299267 NACADO15069 1562 aa15.43■□□□□ 0.06
GABRB3-201ENST00000299267 RSF1Q96T23 1441 aaPredicted RBP15.4■□□□□ 0.06
GABRB3-201ENST00000299267 TRIM26Q12899 539 aaPredicted RBP15.39■□□□□ 0.05
GABRB3-201ENST00000299267 CECR2Q9BXF3 1484 aa15.38■□□□□ 0.05
GABRB3-201ENST00000299267 P3H3Q8IVL6 736 aa15.36■□□□□ 0.05
GABRB3-201ENST00000299267 CSRNP3Q8WYN3 585 aa15.33■□□□□ 0.04
GABRB3-201ENST00000299267 ARID3CA6NKF2 412 aa15.3■□□□□ 0.04
GABRB3-201ENST00000299267 MYT1LQ9UL68 1186 aa15.27■□□□□ 0.03
GABRB3-201ENST00000299267 DCAF1Q9Y4B6 1507 aa15.24■□□□□ 0.03
GABRB3-201ENST00000299267 FAM50AQ14320 339 aaKnown RBP15.16■□□□□ 0.02
GABRB3-201ENST00000299267 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
GABRB3-201ENST00000299267 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
GABRB3-201ENST00000299267 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
GABRB3-201ENST00000299267 BAZ1AQ9NRL2 1556 aaPredicted RBP15.04■□□□□ -0
GABRB3-201ENST00000299267 HRCP23327 699 aa15.02■□□□□ -0
GABRB3-201ENST00000299267 MYO15BQ96JP2 1530 aa15.02□□□□□ -0.01
GABRB3-201ENST00000299267 CNGB1Q14028 1251 aaPredicted RBP14.96□□□□□ -0.01
GABRB3-201ENST00000299267 YTHDC1Q96MU7 727 aaKnown RBP14.95□□□□□ -0.02
GABRB3-201ENST00000299267 POLR3GLQ9BT43 218 aa14.95□□□□□ -0.02
GABRB3-201ENST00000299267 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
GABRB3-201ENST00000299267 TRIM52Q96A61 297 aa14.93□□□□□ -0.02
GABRB3-201ENST00000299267 ZNF777Q9ULD5 760 aaPredicted RBP14.91□□□□□ -0.02
GABRB3-201ENST00000299267 NEUROD1Q13562 356 aa14.9□□□□□ -0.02
GABRB3-201ENST00000299267 CHMP7Q8WUX9 453 aaPredicted RBP14.9□□□□□ -0.02
GABRB3-201ENST00000299267 CCDC88BA6NC98 1476 aa14.88□□□□□ -0.03
GABRB3-201ENST00000299267 WIZO95785 1651 aa14.86□□□□□ -0.03
GABRB3-201ENST00000299267 SOGA1O94964 1423 aa14.8□□□□□ -0.04
GABRB3-201ENST00000299267 ABCC8Q09428 1581 aa14.78□□□□□ -0.04
GABRB3-201ENST00000299267 ERCC6Q03468 1493 aa14.77□□□□□ -0.04
GABRB3-201ENST00000299267 ZNF326Q5BKZ1 582 aaKnown RBP14.75□□□□□ -0.05
GABRB3-201ENST00000299267 ATAD2BQ9ULI0 1458 aa14.74□□□□□ -0.05
GABRB3-201ENST00000299267 CLIP1P30622 1438 aa14.74□□□□□ -0.05
GABRB3-201ENST00000299267 CHIC2Q9UKJ5 165 aa14.74□□□□□ -0.05
GABRB3-201ENST00000299267 CDK11AQ9UQ88 783 aaPredicted RBP14.71□□□□□ -0.05
GABRB3-201ENST00000299267 KIF27Q86VH2 1401 aa14.7□□□□□ -0.06
GABRB3-201ENST00000299267 SMARCA2P51531 1590 aa14.7□□□□□ -0.06
GABRB3-201ENST00000299267 CENPBP07199 599 aaPredicted RBP14.68□□□□□ -0.06
GABRB3-201ENST00000299267 CEP162Q5TB80 1403 aa14.68□□□□□ -0.06
GABRB3-201ENST00000299267 TDRD9Q8NDG6 1382 aaKnown RBP14.67□□□□□ -0.06
GABRB3-201ENST00000299267 KCNH8Q96L42 1107 aa14.66□□□□□ -0.06
GABRB3-201ENST00000299267 CUX2O14529 1486 aa14.66□□□□□ -0.06
GABRB3-201ENST00000299267 SMARCA4P51532 1647 aa14.65□□□□□ -0.06
GABRB3-201ENST00000299267 NPM1P06748 294 aaKnown RBP eCLIP14.63□□□□□ -0.07
GABRB3-201ENST00000299267 GOLGA3Q08378 1498 aa14.63□□□□□ -0.07
GABRB3-201ENST00000299267 CADPSQ9ULU8 1353 aa14.62□□□□□ -0.07
GABRB3-201ENST00000299267 SLC4A1APQ9BWU0 796 aaKnown RBP14.62□□□□□ -0.07
GABRB3-201ENST00000299267 TOP2AP11388 1531 aaKnown RBP14.62□□□□□ -0.07
GABRB3-201ENST00000299267 MTUS2Q5JR59 1369 aa14.61□□□□□ -0.07
GABRB3-201ENST00000299267 EEA1Q15075 1411 aa14.6□□□□□ -0.07
GABRB3-201ENST00000299267 CARMIL1Q5VZK9 1371 aa14.59□□□□□ -0.07
GABRB3-201ENST00000299267 DIEXFQ68CQ4 756 aaKnown RBP14.59□□□□□ -0.07
GABRB3-201ENST00000299267 PLPPR3Q6T4P5 718 aa14.59□□□□□ -0.07
GABRB3-201ENST00000299267 DNAJC5BQ9UF47 199 aa14.57□□□□□ -0.08
GABRB3-201ENST00000299267 TNIKQ9UKE5 1360 aa14.55□□□□□ -0.08
GABRB3-201ENST00000299267 PDS5BQ9NTI5 1447 aa14.55□□□□□ -0.08
GABRB3-201ENST00000299267 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.55□□□□□ -0.08
GABRB3-201ENST00000299267 CEP164Q9UPV0 1460 aa14.54□□□□□ -0.08
GABRB3-201ENST00000299267 RRP7BPQ9NSQ0 103 aa14.53□□□□□ -0.08
GABRB3-201ENST00000299267 RUSC2Q8N2Y8 1516 aa14.51□□□□□ -0.09
GABRB3-201ENST00000299267 PLEKHD1A6NEE1 506 aa14.49□□□□□ -0.09
GABRB3-201ENST00000299267 PELP1Q8IZL8 1130 aaKnown RBP14.49□□□□□ -0.09
GABRB3-201ENST00000299267 EIF4G1Q04637 1599 aaKnown RBP14.47□□□□□ -0.09
GABRB3-201ENST00000299267 SENP3Q9H4L4 574 aaPredicted RBP14.46□□□□□ -0.09
GABRB3-201ENST00000299267 TSPY4P0CV99 314 aa14.46□□□□□ -0.09
GABRB3-201ENST00000299267 TSPY10P0CW01 314 aa14.46□□□□□ -0.09
GABRB3-201ENST00000299267 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.09
GABRB3-201ENST00000299267 BCANQ96GW7 911 aa14.42□□□□□ -0.1
GABRB3-201ENST00000299267 FANCD2Q9BXW9 1451 aa14.42□□□□□ -0.1
GABRB3-201ENST00000299267 KANK4Q5T7N3 995 aaPredicted RBP14.42□□□□□ -0.1
GABRB3-201ENST00000299267 HIRIP3Q9BW71 556 aaPredicted RBP14.4□□□□□ -0.1
GABRB3-201ENST00000299267 CFDP1Q9UEE9 299 aaPredicted RBP14.4□□□□□ -0.1
GABRB3-201ENST00000299267 ZNF316A6NFI3 1004 aaPredicted RBP14.39□□□□□ -0.11
GABRB3-201ENST00000299267 NCAPD3P42695 1498 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms