RNA–Protein interactions for RNA: ENST00000261584.8

PALB2-201, Transcript of partner and localizer of BRCA2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PALB2, Length 4,003 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-201ENST00000261584 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
PALB2-201ENST00000261584 SUPT5HO00267 1087 aaKnown RBP17.51■□□□□ 0.39
PALB2-201ENST00000261584 SHROOM4Q9ULL8 1493 aa17.47■□□□□ 0.39
PALB2-201ENST00000261584 DCAF8L2P0C7V8 631 aa17.45■□□□□ 0.38
PALB2-201ENST00000261584 EHMT2Q96KQ7 1210 aa16.96■□□□□ 0.31
PALB2-201ENST00000261584 PCGF6Q9BYE7 350 aa16.9■□□□□ 0.3
PALB2-201ENST00000261584 PPARGC1BQ86YN6 1023 aaKnown RBP16.65■□□□□ 0.26
PALB2-201ENST00000261584 FAM9AQ8IZU1 332 aaPredicted RBP16.48■□□□□ 0.23
PALB2-201ENST00000261584 TTBK1Q5TCY1 1321 aaPredicted RBP16.38■□□□□ 0.21
PALB2-201ENST00000261584 LOC105371045A0A1W2PR82 267 aa16.37■□□□□ 0.21
PALB2-201ENST00000261584 HRCP23327 699 aa16.37■□□□□ 0.21
PALB2-201ENST00000261584 CHIC1Q5VXU3 224 aa16.2■□□□□ 0.18
PALB2-201ENST00000261584 TRIM41Q8WV44 630 aa15.87■□□□□ 0.13
PALB2-201ENST00000261584 YTHDC1Q96MU7 727 aaKnown RBP15.86■□□□□ 0.13
PALB2-201ENST00000261584 TRIM26Q12899 539 aaPredicted RBP15.83■□□□□ 0.12
PALB2-201ENST00000261584 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
PALB2-201ENST00000261584 RANGAP1P46060 587 aaPredicted RBP15.8■□□□□ 0.12
PALB2-201ENST00000261584 MYO15BQ96JP2 1530 aa15.77■□□□□ 0.12
PALB2-201ENST00000261584 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.73■□□□□ 0.11
PALB2-201ENST00000261584 ZEB1P37275 1124 aaPredicted RBP15.57■□□□□ 0.08
PALB2-201ENST00000261584 SCAF1Q9H7N4 1312 aaKnown RBP15.49■□□□□ 0.07
PALB2-201ENST00000261584 CENPBP07199 599 aaPredicted RBP15.48■□□□□ 0.07
PALB2-201ENST00000261584 PELP1Q8IZL8 1130 aaKnown RBP15.45■□□□□ 0.06
PALB2-201ENST00000261584 CCDC180Q9P1Z9 1646 aa15.45■□□□□ 0.06
PALB2-201ENST00000261584 GTF3C3Q9Y5Q9 886 aa15.45■□□□□ 0.06
PALB2-201ENST00000261584 UBTFP17480 764 aaKnown RBP15.42■□□□□ 0.06
PALB2-201ENST00000261584 HNRNPUL2Q1KMD3 747 aaKnown RBP15.38■□□□□ 0.05
PALB2-201ENST00000261584 DIEXFQ68CQ4 756 aaKnown RBP15.37■□□□□ 0.05
PALB2-201ENST00000261584 NEUROD1Q13562 356 aa15.32■□□□□ 0.04
PALB2-201ENST00000261584 APLP2Q06481 763 aa15.27■□□□□ 0.03
PALB2-201ENST00000261584 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
PALB2-201ENST00000261584 ITGAEP38570 1179 aa15.19■□□□□ 0.02
PALB2-201ENST00000261584 BCANQ96GW7 911 aa15.08■□□□□ 0
PALB2-201ENST00000261584 DCAF1Q9Y4B6 1507 aa15.08■□□□□ 0
PALB2-201ENST00000261584 ATP1B4Q9UN42 357 aaPredicted RBP15.07■□□□□ 0
PALB2-201ENST00000261584 ZCCHC6Q5VYS8 1495 aaKnown RBP15.03■□□□□ -0
PALB2-201ENST00000261584 CNGB1Q14028 1251 aaPredicted RBP14.95□□□□□ -0.02
PALB2-201ENST00000261584 ZNF316A6NFI3 1004 aaPredicted RBP14.92□□□□□ -0.02
PALB2-201ENST00000261584 MIER1Q8N108 512 aa14.92□□□□□ -0.02
PALB2-201ENST00000261584 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
PALB2-201ENST00000261584 ABCC9O60706 1549 aa14.77□□□□□ -0.04
PALB2-201ENST00000261584 ERICH6Q7L0X2 663 aa14.73□□□□□ -0.05
PALB2-201ENST00000261584 NEFLP07196 543 aa14.72□□□□□ -0.05
PALB2-201ENST00000261584 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
PALB2-201ENST00000261584 MYT1Q01538 1121 aa14.71□□□□□ -0.05
PALB2-201ENST00000261584 HIRIP3Q9BW71 556 aaPredicted RBP14.71□□□□□ -0.05
PALB2-201ENST00000261584 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
PALB2-201ENST00000261584 RSF1Q96T23 1441 aaPredicted RBP14.66□□□□□ -0.06
PALB2-201ENST00000261584 POLR3GLQ9BT43 218 aa14.62□□□□□ -0.07
PALB2-201ENST00000261584 FAM50AQ14320 339 aaKnown RBP14.59□□□□□ -0.07
PALB2-201ENST00000261584 FKBP8Q14318 412 aa14.57□□□□□ -0.08
PALB2-201ENST00000261584 TRIM52Q96A61 297 aa14.57□□□□□ -0.08
PALB2-201ENST00000261584 P3H3Q8IVL6 736 aa14.56□□□□□ -0.08
PALB2-201ENST00000261584 DDX10Q13206 875 aaKnown RBP14.55□□□□□ -0.08
PALB2-201ENST00000261584 IRX6P78412 446 aaPredicted RBP14.54□□□□□ -0.08
PALB2-201ENST00000261584 SENP3-EIF4A1A0A087X0R7 540 aa14.54□□□□□ -0.08
PALB2-201ENST00000261584 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
PALB2-201ENST00000261584 RB1CC1Q8TDY2 1594 aa14.47□□□□□ -0.09
PALB2-201ENST00000261584 CEP162Q5TB80 1403 aa14.45□□□□□ -0.1
PALB2-201ENST00000261584 KCNH8Q96L42 1107 aa14.44□□□□□ -0.1
PALB2-201ENST00000261584 ARID3CA6NKF2 412 aa14.41□□□□□ -0.1
PALB2-201ENST00000261584 SUPT16HQ9Y5B9 1047 aaKnown RBP14.41□□□□□ -0.1
PALB2-201ENST00000261584 SOGA1O94964 1423 aa14.41□□□□□ -0.1
PALB2-201ENST00000261584 ANP32CO43423 234 aa14.31□□□□□ -0.12
PALB2-201ENST00000261584 SIN3AQ96ST3 1273 aa14.31□□□□□ -0.12
PALB2-201ENST00000261584 ABCC8Q09428 1581 aa14.3□□□□□ -0.12
PALB2-201ENST00000261584 CCDC88BA6NC98 1476 aa14.28□□□□□ -0.12
PALB2-201ENST00000261584 HNRNPUQ00839 825 aaKnown RBP eCLIP14.28□□□□□ -0.12
PALB2-201ENST00000261584 ZNF326Q5BKZ1 582 aaKnown RBP14.28□□□□□ -0.12
PALB2-201ENST00000261584 CLIP1P30622 1438 aa14.25□□□□□ -0.13
PALB2-201ENST00000261584 NBR1Q14596 966 aa14.24□□□□□ -0.13
PALB2-201ENST00000261584 TSHZ2Q9NRE2 1034 aa14.24□□□□□ -0.13
PALB2-201ENST00000261584 RUSC2Q8N2Y8 1516 aa14.23□□□□□ -0.13
PALB2-201ENST00000261584 KANK4Q5T7N3 995 aaPredicted RBP14.23□□□□□ -0.13
PALB2-201ENST00000261584 FAM9BQ8IZU0 186 aa14.23□□□□□ -0.13
PALB2-201ENST00000261584 ANP32EQ9BTT0 268 aa14.22□□□□□ -0.13
PALB2-201ENST00000261584 MROH2BQ7Z745 1585 aa14.22□□□□□ -0.13
PALB2-201ENST00000261584 CDK11AQ9UQ88 783 aaPredicted RBP14.2□□□□□ -0.14
PALB2-201ENST00000261584 SALL2Q9Y467 1007 aaPredicted RBP14.19□□□□□ -0.14
PALB2-201ENST00000261584 NACADO15069 1562 aa14.18□□□□□ -0.14
PALB2-201ENST00000261584 CHIC2Q9UKJ5 165 aa14.17□□□□□ -0.14
PALB2-201ENST00000261584 NPM2Q86SE8 214 aaKnown RBP14.17□□□□□ -0.14
PALB2-201ENST00000261584 BCL11AQ9H165 835 aa14.16□□□□□ -0.14
PALB2-201ENST00000261584 TNIKQ9UKE5 1360 aa14.15□□□□□ -0.14
PALB2-201ENST00000261584 RBM19Q9Y4C8 960 aaKnown RBP14.09□□□□□ -0.15
PALB2-201ENST00000261584 UNC13AQ9UPW8 1703 aa14.08□□□□□ -0.15
PALB2-201ENST00000261584 WIZO95785 1651 aa14.07□□□□□ -0.16
PALB2-201ENST00000261584 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
PALB2-201ENST00000261584 RTL5Q5HYW3 569 aaPredicted RBP14.04□□□□□ -0.16
PALB2-201ENST00000261584 WRNQ14191 1432 aaPredicted RBP eCLIP14.04□□□□□ -0.16
PALB2-201ENST00000261584 B4GALNT3Q6L9W6 998 aa14.03□□□□□ -0.16
PALB2-201ENST00000261584 TONSLQ96HA7 1378 aa14.02□□□□□ -0.17
PALB2-201ENST00000261584 RRP7BPQ9NSQ0 103 aa14.01□□□□□ -0.17
PALB2-201ENST00000261584 RTN4Q9NQC3 1192 aaKnown RBP14□□□□□ -0.17
PALB2-201ENST00000261584 MRS2Q9HD23 443 aa13.98□□□□□ -0.17
PALB2-201ENST00000261584 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
PALB2-201ENST00000261584 FOXD1Q16676 465 aa13.93□□□□□ -0.18
PALB2-201ENST00000261584 ZNF777Q9ULD5 760 aaPredicted RBP13.92□□□□□ -0.18
PALB2-201ENST00000261584 DHX57Q6P158 1386 aaKnown RBP13.91□□□□□ -0.18
PALB2-201ENST00000261584 DAXXQ9UER7 740 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms