RNA–Protein interactions for RNA: ENST00000244728.9

COL21A1-201, Transcript of collagen type XXI alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL21A1, Length 4,339 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-201ENST00000244728 DCAF8L2P0C7V8 631 aa16.52■□□□□ 0.24
COL21A1-201ENST00000244728 NISCHQ9Y2I1 1504 aa16.46■□□□□ 0.23
COL21A1-201ENST00000244728 SUPT5HO00267 1087 aaKnown RBP15.78■□□□□ 0.12
COL21A1-201ENST00000244728 SHROOM4Q9ULL8 1493 aa15.68■□□□□ 0.1
COL21A1-201ENST00000244728 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
COL21A1-201ENST00000244728 PCGF6Q9BYE7 350 aa14.98□□□□□ -0.01
COL21A1-201ENST00000244728 FAM9AQ8IZU1 332 aaPredicted RBP14.87□□□□□ -0.03
COL21A1-201ENST00000244728 HRCP23327 699 aa14.75□□□□□ -0.05
COL21A1-201ENST00000244728 TTBK1Q5TCY1 1321 aaPredicted RBP14.65□□□□□ -0.06
COL21A1-201ENST00000244728 PPARGC1BQ86YN6 1023 aaKnown RBP14.55□□□□□ -0.08
COL21A1-201ENST00000244728 CHIC1Q5VXU3 224 aa14.52□□□□□ -0.08
COL21A1-201ENST00000244728 RANGAP1P46060 587 aaPredicted RBP14.51□□□□□ -0.09
COL21A1-201ENST00000244728 TRIM41Q8WV44 630 aa14.48□□□□□ -0.09
COL21A1-201ENST00000244728 ZEB1P37275 1124 aaPredicted RBP14.41□□□□□ -0.1
COL21A1-201ENST00000244728 PELP1Q8IZL8 1130 aaKnown RBP14.41□□□□□ -0.1
COL21A1-201ENST00000244728 LOC105371045A0A1W2PR82 267 aa14.39□□□□□ -0.11
COL21A1-201ENST00000244728 APLP2Q06481 763 aa14.37□□□□□ -0.11
COL21A1-201ENST00000244728 TRIM26Q12899 539 aaPredicted RBP14.35□□□□□ -0.11
COL21A1-201ENST00000244728 UBTFP17480 764 aaKnown RBP14.23□□□□□ -0.13
COL21A1-201ENST00000244728 CCER1Q8TC90 406 aaPredicted RBP14.19□□□□□ -0.14
COL21A1-201ENST00000244728 CENPBP07199 599 aaPredicted RBP14.18□□□□□ -0.14
COL21A1-201ENST00000244728 ATP1B4Q9UN42 357 aaPredicted RBP14.16□□□□□ -0.14
COL21A1-201ENST00000244728 ABCC9O60706 1549 aa14.02□□□□□ -0.17
COL21A1-201ENST00000244728 MYO15BQ96JP2 1530 aa14.01□□□□□ -0.17
COL21A1-201ENST00000244728 PABPN1Q86U42 306 aaKnown RBP eCLIP13.99□□□□□ -0.17
COL21A1-201ENST00000244728 YTHDC1Q96MU7 727 aaKnown RBP13.98□□□□□ -0.17
COL21A1-201ENST00000244728 MYT1Q01538 1121 aa13.93□□□□□ -0.18
COL21A1-201ENST00000244728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.91□□□□□ -0.18
COL21A1-201ENST00000244728 DCAF1Q9Y4B6 1507 aa13.89□□□□□ -0.19
COL21A1-201ENST00000244728 ITGAEP38570 1179 aa13.83□□□□□ -0.19
COL21A1-201ENST00000244728 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
COL21A1-201ENST00000244728 DIEXFQ68CQ4 756 aaKnown RBP13.82□□□□□ -0.2
COL21A1-201ENST00000244728 HNRNPUL2Q1KMD3 747 aaKnown RBP13.78□□□□□ -0.2
COL21A1-201ENST00000244728 GTF3C3Q9Y5Q9 886 aa13.78□□□□□ -0.2
COL21A1-201ENST00000244728 SCAF1Q9H7N4 1312 aaKnown RBP13.75□□□□□ -0.21
COL21A1-201ENST00000244728 ACIN1Q9UKV3 1341 aaKnown RBP13.73□□□□□ -0.21
COL21A1-201ENST00000244728 NEUROD1Q13562 356 aa13.6□□□□□ -0.23
COL21A1-201ENST00000244728 CCDC180Q9P1Z9 1646 aa13.55□□□□□ -0.24
COL21A1-201ENST00000244728 ZNF316A6NFI3 1004 aaPredicted RBP13.51□□□□□ -0.25
COL21A1-201ENST00000244728 CNGB1Q14028 1251 aaPredicted RBP13.5□□□□□ -0.25
COL21A1-201ENST00000244728 NEFLP07196 543 aa13.45□□□□□ -0.26
COL21A1-201ENST00000244728 POLR3GLQ9BT43 218 aa13.45□□□□□ -0.26
COL21A1-201ENST00000244728 ERICH6Q7L0X2 663 aa13.43□□□□□ -0.26
COL21A1-201ENST00000244728 SCRIBQ14160 1630 aa13.42□□□□□ -0.26
COL21A1-201ENST00000244728 FAM50AQ14320 339 aaKnown RBP13.41□□□□□ -0.26
COL21A1-201ENST00000244728 MYT1LQ9UL68 1186 aa13.4□□□□□ -0.26
COL21A1-201ENST00000244728 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
COL21A1-201ENST00000244728 CSRNP3Q8WYN3 585 aa13.38□□□□□ -0.27
COL21A1-201ENST00000244728 ARID3CA6NKF2 412 aa13.34□□□□□ -0.27
COL21A1-201ENST00000244728 FBLN2P98095 1184 aa13.31□□□□□ -0.28
COL21A1-201ENST00000244728 RSF1Q96T23 1441 aaPredicted RBP13.3□□□□□ -0.28
COL21A1-201ENST00000244728 BCANQ96GW7 911 aa13.28□□□□□ -0.28
COL21A1-201ENST00000244728 MIER1Q8N108 512 aa13.27□□□□□ -0.28
COL21A1-201ENST00000244728 TRIM52Q96A61 297 aa13.24□□□□□ -0.29
COL21A1-201ENST00000244728 ZNF326Q5BKZ1 582 aaKnown RBP13.13□□□□□ -0.31
COL21A1-201ENST00000244728 CEP162Q5TB80 1403 aa13.1□□□□□ -0.31
COL21A1-201ENST00000244728 RB1CC1Q8TDY2 1594 aa13.08□□□□□ -0.32
COL21A1-201ENST00000244728 CLSPNQ9HAW4 1339 aa13.08□□□□□ -0.32
COL21A1-201ENST00000244728 SLC4A1APQ9BWU0 796 aaKnown RBP13.06□□□□□ -0.32
COL21A1-201ENST00000244728 ZNF777Q9ULD5 760 aaPredicted RBP13.04□□□□□ -0.32
COL21A1-201ENST00000244728 FKBP8Q14318 412 aa13.04□□□□□ -0.32
COL21A1-201ENST00000244728 ANP32CO43423 234 aa13□□□□□ -0.33
COL21A1-201ENST00000244728 CECR2Q9BXF3 1484 aa12.99□□□□□ -0.33
COL21A1-201ENST00000244728 TNIKQ9UKE5 1360 aa12.97□□□□□ -0.33
COL21A1-201ENST00000244728 DDX10Q13206 875 aaKnown RBP12.96□□□□□ -0.33
COL21A1-201ENST00000244728 CLIP1P30622 1438 aa12.96□□□□□ -0.34
COL21A1-201ENST00000244728 CHIC2Q9UKJ5 165 aa12.95□□□□□ -0.34
COL21A1-201ENST00000244728 CDK11AQ9UQ88 783 aaPredicted RBP12.94□□□□□ -0.34
COL21A1-201ENST00000244728 SUPT16HQ9Y5B9 1047 aaKnown RBP12.93□□□□□ -0.34
COL21A1-201ENST00000244728 GOLGA3Q08378 1498 aa12.91□□□□□ -0.34
COL21A1-201ENST00000244728 EEA1Q15075 1411 aa12.9□□□□□ -0.34
COL21A1-201ENST00000244728 ANP32EQ9BTT0 268 aa12.9□□□□□ -0.34
COL21A1-201ENST00000244728 SOGA1O94964 1423 aa12.89□□□□□ -0.35
COL21A1-201ENST00000244728 HIRIP3Q9BW71 556 aaPredicted RBP12.89□□□□□ -0.35
COL21A1-201ENST00000244728 MROH2BQ7Z745 1585 aa12.86□□□□□ -0.35
COL21A1-201ENST00000244728 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
COL21A1-201ENST00000244728 CCDC88BA6NC98 1476 aa12.83□□□□□ -0.36
COL21A1-201ENST00000244728 ABCC8Q09428 1581 aa12.82□□□□□ -0.36
COL21A1-201ENST00000244728 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
COL21A1-201ENST00000244728 NACADO15069 1562 aa12.81□□□□□ -0.36
COL21A1-201ENST00000244728 HNRNPUQ00839 825 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL21A1-201ENST00000244728 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.36
COL21A1-201ENST00000244728 IRX6P78412 446 aaPredicted RBP12.77□□□□□ -0.37
COL21A1-201ENST00000244728 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
COL21A1-201ENST00000244728 RRP7BPQ9NSQ0 103 aa12.76□□□□□ -0.37
COL21A1-201ENST00000244728 TONSLQ96HA7 1378 aa12.76□□□□□ -0.37
COL21A1-201ENST00000244728 CHMP7Q8WUX9 453 aaPredicted RBP12.75□□□□□ -0.37
COL21A1-201ENST00000244728 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.75□□□□□ -0.37
COL21A1-201ENST00000244728 TSHZ2Q9NRE2 1034 aa12.75□□□□□ -0.37
COL21A1-201ENST00000244728 WIZO95785 1651 aa12.75□□□□□ -0.37
COL21A1-201ENST00000244728 DAXXQ9UER7 740 aaPredicted RBP12.74□□□□□ -0.37
COL21A1-201ENST00000244728 MTUS2Q5JR59 1369 aa12.74□□□□□ -0.37
COL21A1-201ENST00000244728 BAZ1AQ9NRL2 1556 aaPredicted RBP12.74□□□□□ -0.37
COL21A1-201ENST00000244728 CHGAP10645 457 aaKnown RBP12.71□□□□□ -0.37
COL21A1-201ENST00000244728 KDM2AQ9Y2K7 1162 aa12.71□□□□□ -0.37
COL21A1-201ENST00000244728 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
COL21A1-201ENST00000244728 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
COL21A1-201ENST00000244728 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
COL21A1-201ENST00000244728 FAM9BQ8IZU0 186 aa12.69□□□□□ -0.38
COL21A1-201ENST00000244728 SENP3Q9H4L4 574 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms