RNA–Protein interactions for RNA: ENST00000070846.10

PKP2-201, Transcript of plakophilin 2, humanhuman

TSL 1 (best) BASIC

Gene PKP2, Length 4,241 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP2-201ENST00000070846 DCAF8L2P0C7V8 631 aa21■□□□□ 0.95
PKP2-201ENST00000070846 NISCHQ9Y2I1 1504 aa20.17■□□□□ 0.82
PKP2-201ENST00000070846 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
PKP2-201ENST00000070846 SHROOM4Q9ULL8 1493 aa19.3■□□□□ 0.68
PKP2-201ENST00000070846 EHMT2Q96KQ7 1210 aa18.77■□□□□ 0.6
PKP2-201ENST00000070846 FAM9AQ8IZU1 332 aaPredicted RBP18.34■□□□□ 0.53
PKP2-201ENST00000070846 APLP2Q06481 763 aa18.19■□□□□ 0.5
PKP2-201ENST00000070846 RANGAP1P46060 587 aaPredicted RBP18.11■□□□□ 0.49
PKP2-201ENST00000070846 TTBK1Q5TCY1 1321 aaPredicted RBP18■□□□□ 0.47
PKP2-201ENST00000070846 TRIM41Q8WV44 630 aa17.97■□□□□ 0.47
PKP2-201ENST00000070846 ATP1B4Q9UN42 357 aaPredicted RBP17.91■□□□□ 0.46
PKP2-201ENST00000070846 ABCC9O60706 1549 aa17.89■□□□□ 0.45
PKP2-201ENST00000070846 UBTFP17480 764 aaKnown RBP17.79■□□□□ 0.44
PKP2-201ENST00000070846 PABPN1Q86U42 306 aaKnown RBP eCLIP17.79■□□□□ 0.44
PKP2-201ENST00000070846 PCGF6Q9BYE7 350 aa17.51■□□□□ 0.39
PKP2-201ENST00000070846 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
PKP2-201ENST00000070846 HNRNPUL2Q1KMD3 747 aaKnown RBP17.44■□□□□ 0.38
PKP2-201ENST00000070846 PPARGC1BQ86YN6 1023 aaKnown RBP17.35■□□□□ 0.37
PKP2-201ENST00000070846 MYT1LQ9UL68 1186 aa17.34■□□□□ 0.37
PKP2-201ENST00000070846 CCER1Q8TC90 406 aaPredicted RBP17.24■□□□□ 0.35
PKP2-201ENST00000070846 ITGAEP38570 1179 aa17.17■□□□□ 0.34
PKP2-201ENST00000070846 FBLN2P98095 1184 aa17.13■□□□□ 0.33
PKP2-201ENST00000070846 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
PKP2-201ENST00000070846 CHIC1Q5VXU3 224 aa17.12■□□□□ 0.33
PKP2-201ENST00000070846 ZEB1P37275 1124 aaPredicted RBP16.86■□□□□ 0.29
PKP2-201ENST00000070846 PELP1Q8IZL8 1130 aaKnown RBP16.86■□□□□ 0.29
PKP2-201ENST00000070846 SCRIBQ14160 1630 aa16.83■□□□□ 0.29
PKP2-201ENST00000070846 POLR3GLQ9BT43 218 aa16.8■□□□□ 0.28
PKP2-201ENST00000070846 TRIM26Q12899 539 aaPredicted RBP16.76■□□□□ 0.27
PKP2-201ENST00000070846 ARID3CA6NKF2 412 aa16.74■□□□□ 0.27
PKP2-201ENST00000070846 FAM50AQ14320 339 aaKnown RBP16.74■□□□□ 0.27
PKP2-201ENST00000070846 P3H3Q8IVL6 736 aa16.72■□□□□ 0.27
PKP2-201ENST00000070846 CNGB1Q14028 1251 aaPredicted RBP16.67■□□□□ 0.26
PKP2-201ENST00000070846 TRIM52Q96A61 297 aa16.61■□□□□ 0.25
PKP2-201ENST00000070846 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
PKP2-201ENST00000070846 ZCCHC6Q5VYS8 1495 aaKnown RBP16.59■□□□□ 0.25
PKP2-201ENST00000070846 SLC4A1APQ9BWU0 796 aaKnown RBP16.59■□□□□ 0.25
PKP2-201ENST00000070846 CENPBP07199 599 aaPredicted RBP16.56■□□□□ 0.24
PKP2-201ENST00000070846 YTHDC1Q96MU7 727 aaKnown RBP16.56■□□□□ 0.24
PKP2-201ENST00000070846 ZNF777Q9ULD5 760 aaPredicted RBP16.48■□□□□ 0.23
PKP2-201ENST00000070846 NPM1P06748 294 aaKnown RBP eCLIP16.48■□□□□ 0.23
PKP2-201ENST00000070846 RB1CC1Q8TDY2 1594 aa16.44■□□□□ 0.22
PKP2-201ENST00000070846 CCDC180Q9P1Z9 1646 aa16.44■□□□□ 0.22
PKP2-201ENST00000070846 CDK11AQ9UQ88 783 aaPredicted RBP16.41■□□□□ 0.22
PKP2-201ENST00000070846 NEFLP07196 543 aa16.41■□□□□ 0.22
PKP2-201ENST00000070846 ZNF326Q5BKZ1 582 aaKnown RBP16.41■□□□□ 0.22
PKP2-201ENST00000070846 NEUROD1Q13562 356 aa16.4■□□□□ 0.22
PKP2-201ENST00000070846 CHMP7Q8WUX9 453 aaPredicted RBP16.39■□□□□ 0.21
PKP2-201ENST00000070846 BCANQ96GW7 911 aa16.37■□□□□ 0.21
PKP2-201ENST00000070846 PLPPR3Q6T4P5 718 aa16.36■□□□□ 0.21
PKP2-201ENST00000070846 ESF1Q9H501 851 aaKnown RBP16.34■□□□□ 0.21
PKP2-201ENST00000070846 HRCP23327 699 aa16.31■□□□□ 0.2
PKP2-201ENST00000070846 NACADO15069 1562 aa16.23■□□□□ 0.19
PKP2-201ENST00000070846 CHGAP10645 457 aaKnown RBP16.18■□□□□ 0.18
PKP2-201ENST00000070846 ERICH6Q7L0X2 663 aa16.16■□□□□ 0.18
PKP2-201ENST00000070846 STAG3Q9UJ98 1225 aa16.16■□□□□ 0.18
PKP2-201ENST00000070846 BAZ1BQ9UIG0 1483 aaKnown RBP16.13■□□□□ 0.17
PKP2-201ENST00000070846 KCNH8Q96L42 1107 aa16.13■□□□□ 0.17
PKP2-201ENST00000070846 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
PKP2-201ENST00000070846 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
PKP2-201ENST00000070846 CHIC2Q9UKJ5 165 aa16.09■□□□□ 0.17
PKP2-201ENST00000070846 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.08■□□□□ 0.16
PKP2-201ENST00000070846 TSPY4P0CV99 314 aa16.06■□□□□ 0.16
PKP2-201ENST00000070846 TSPY10P0CW01 314 aa16.06■□□□□ 0.16
PKP2-201ENST00000070846 SLC24A1O60721 1099 aa16■□□□□ 0.15
PKP2-201ENST00000070846 MTUS2Q5JR59 1369 aa16■□□□□ 0.15
PKP2-201ENST00000070846 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
PKP2-201ENST00000070846 PLEKHD1A6NEE1 506 aa15.99■□□□□ 0.15
PKP2-201ENST00000070846 DIEXFQ68CQ4 756 aaKnown RBP15.98■□□□□ 0.15
PKP2-201ENST00000070846 WRNQ14191 1432 aaPredicted RBP eCLIP15.95■□□□□ 0.14
PKP2-201ENST00000070846 TRHP20396 242 aaPredicted RBP15.91■□□□□ 0.14
PKP2-201ENST00000070846 SENP3Q9H4L4 574 aaPredicted RBP15.91■□□□□ 0.14
PKP2-201ENST00000070846 ARID4BQ4LE39 1312 aaPredicted RBP15.88■□□□□ 0.13
PKP2-201ENST00000070846 ANP32CO43423 234 aa15.88■□□□□ 0.13
PKP2-201ENST00000070846 BAZ1AQ9NRL2 1556 aaPredicted RBP15.87■□□□□ 0.13
PKP2-201ENST00000070846 CLIP1P30622 1438 aa15.87■□□□□ 0.13
PKP2-201ENST00000070846 NEFMP07197 916 aa15.86■□□□□ 0.13
PKP2-201ENST00000070846 KIF27Q86VH2 1401 aa15.86■□□□□ 0.13
PKP2-201ENST00000070846 CLSPNQ9HAW4 1339 aa15.84■□□□□ 0.13
PKP2-201ENST00000070846 DAXXQ9UER7 740 aaPredicted RBP15.83■□□□□ 0.12
PKP2-201ENST00000070846 RRP7BPQ9NSQ0 103 aa15.83■□□□□ 0.12
PKP2-201ENST00000070846 KDM2AQ9Y2K7 1162 aa15.83■□□□□ 0.12
PKP2-201ENST00000070846 TONSLQ96HA7 1378 aa15.82■□□□□ 0.12
PKP2-201ENST00000070846 CFDP1Q9UEE9 299 aaPredicted RBP15.8■□□□□ 0.12
PKP2-201ENST00000070846 BCL11AQ9H165 835 aa15.78■□□□□ 0.12
PKP2-201ENST00000070846 DCAF1Q9Y4B6 1507 aa15.78■□□□□ 0.12
PKP2-201ENST00000070846 PPP1R15AO75807 674 aaPredicted RBP15.75■□□□□ 0.11
PKP2-201ENST00000070846 PLEKHG5O94827 1062 aa15.74■□□□□ 0.11
PKP2-201ENST00000070846 EEA1Q15075 1411 aa15.73■□□□□ 0.11
PKP2-201ENST00000070846 SCAF1Q9H7N4 1312 aaKnown RBP15.73■□□□□ 0.11
PKP2-201ENST00000070846 ZNF316A6NFI3 1004 aaPredicted RBP15.73■□□□□ 0.11
PKP2-201ENST00000070846 PDS5BQ9NTI5 1447 aa15.73■□□□□ 0.11
PKP2-201ENST00000070846 TDRD9Q8NDG6 1382 aaKnown RBP15.72■□□□□ 0.11
PKP2-201ENST00000070846 C14orf37Q86TY3 774 aa15.71■□□□□ 0.11
PKP2-201ENST00000070846 RGL3Q3MIN7 710 aa15.7■□□□□ 0.1
PKP2-201ENST00000070846 CUX2O14529 1486 aa15.7■□□□□ 0.1
PKP2-201ENST00000070846 CARMIL1Q5VZK9 1371 aa15.68■□□□□ 0.1
PKP2-201ENST00000070846 GOLGA3Q08378 1498 aa15.68■□□□□ 0.1
PKP2-201ENST00000070846 ZBTB47Q9UFB7 747 aaPredicted RBP15.67■□□□□ 0.1
PKP2-201ENST00000070846 MROH2BQ7Z745 1585 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms