RNA–Protein interactions for RNA: ENSMUST00000060896.4

Col6a6-201, Transcript of Collagen alpha-6(VI) chain, mousemouse

TSL 1 (best) BASIC

Gene Col6a6, Length 3,954 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6-201ENSMUST00000060896 Rhox8Q6VSS7 320 aa12.76□□□□□ -0.37
Col6a6-201ENSMUST00000060896 NischQ80TM9 1593 aa12.26□□□□□ -0.45
Col6a6-201ENSMUST00000060896 Gm35339A0A140LHH9 1649 aa12.22□□□□□ -0.45
Col6a6-201ENSMUST00000060896 Ccdc136Q3TVA9 1136 aa11.69□□□□□ -0.54
Col6a6-201ENSMUST00000060896 Ehmt2Q9Z148 1263 aaKnown RBP11.64□□□□□ -0.55
Col6a6-201ENSMUST00000060896 Abcc9P70170 1546 aa11.63□□□□□ -0.55
Col6a6-201ENSMUST00000060896 Abcc8B2RUS7 1588 aa11.57□□□□□ -0.56
Col6a6-201ENSMUST00000060896 Cngb1E1AZ71 1325 aa11.26□□□□□ -0.61
Col6a6-201ENSMUST00000060896 Gab3Q8BSM5 595 aa11.23□□□□□ -0.61
Col6a6-201ENSMUST00000060896 Trim41Q5NCC3 630 aa11.21□□□□□ -0.61
Col6a6-201ENSMUST00000060896 Esf1Q3V1V3 845 aaKnown RBP11.16□□□□□ -0.62
Col6a6-201ENSMUST00000060896 ScribQ80U72 1612 aa11.12□□□□□ -0.63
Col6a6-201ENSMUST00000060896 Zcchc6Q5BLK4 1491 aaKnown RBP11.01□□□□□ -0.65
Col6a6-201ENSMUST00000060896 Rpgrip1Q9EPQ2 1331 aa10.96□□□□□ -0.65
Col6a6-201ENSMUST00000060896 Ccdc180J3QNE4 1664 aa10.96□□□□□ -0.65
Col6a6-201ENSMUST00000060896 NacadQ5SWP3 1504 aa10.93□□□□□ -0.66
Col6a6-201ENSMUST00000060896 Myt1lP97500 1187 aa10.88□□□□□ -0.67
Col6a6-201ENSMUST00000060896 HrcG5E8J6 738 aa10.86□□□□□ -0.67
Col6a6-201ENSMUST00000060896 Rtl1Q7M732 1744 aa10.85□□□□□ -0.67
Col6a6-201ENSMUST00000060896 Dcaf1Q80TR8 1506 aa10.85□□□□□ -0.67
Col6a6-201ENSMUST00000060896 Zeb1Q64318 1117 aa10.84□□□□□ -0.67
Col6a6-201ENSMUST00000060896 Acin1Q9JIX8 1338 aaKnown RBP10.82□□□□□ -0.68
Col6a6-201ENSMUST00000060896 Npm2Q80W85 207 aa10.8□□□□□ -0.68
Col6a6-201ENSMUST00000060896 Rb1cc1Q9ESK9 1588 aa10.74□□□□□ -0.69
Col6a6-201ENSMUST00000060896 Kdm5dQ62240 1548 aa10.73□□□□□ -0.69
Col6a6-201ENSMUST00000060896 UbtfP25976 765 aaKnown RBP10.71□□□□□ -0.69
Col6a6-201ENSMUST00000060896 Il27Q8K3I6 234 aa10.7□□□□□ -0.7
Col6a6-201ENSMUST00000060896 Chic1Q8CBW7 227 aa10.67□□□□□ -0.7
Col6a6-201ENSMUST00000060896 Wdr66E9Q743 1299 aa10.66□□□□□ -0.7
Col6a6-201ENSMUST00000060896 Sycp2Q9CUU3 1500 aa10.62□□□□□ -0.71
Col6a6-201ENSMUST00000060896 Ppargc1bQ8VHJ7 1014 aa10.53□□□□□ -0.72
Col6a6-201ENSMUST00000060896 Ap3b1Q9Z1T1 1105 aa10.53□□□□□ -0.72
Col6a6-201ENSMUST00000060896 Las1lA2BE28 776 aaKnown RBP10.5□□□□□ -0.73
Col6a6-201ENSMUST00000060896 Pcgf6Q99NA9 353 aa10.5□□□□□ -0.73
Col6a6-201ENSMUST00000060896 Baz1aO88379 1555 aa10.5□□□□□ -0.73
Col6a6-201ENSMUST00000060896 Ube2uB1AUC4 352 aa10.48□□□□□ -0.73
Col6a6-201ENSMUST00000060896 Crybg2B7ZCC2 1516 aa10.47□□□□□ -0.73
Col6a6-201ENSMUST00000060896 Supt5hO55201 1082 aaKnown RBP10.45□□□□□ -0.74
Col6a6-201ENSMUST00000060896 Mier1Q5UAK0 511 aa10.44□□□□□ -0.74
Col6a6-201ENSMUST00000060896 Brd4Q9ESU6 1400 aaKnown RBP10.41□□□□□ -0.74
Col6a6-201ENSMUST00000060896 Plekhg3Q4VAC9 1341 aa10.4□□□□□ -0.75
Col6a6-201ENSMUST00000060896 Cep164Q5DU05 1446 aa10.39□□□□□ -0.75
Col6a6-201ENSMUST00000060896 NefmP08553 848 aa10.39□□□□□ -0.75
Col6a6-201ENSMUST00000060896 Pds5bQ4VA53 1446 aaKnown RBP10.36□□□□□ -0.75
Col6a6-201ENSMUST00000060896 Rsf1E9PWW9 1441 aaKnown RBP10.33□□□□□ -0.76
Col6a6-201ENSMUST00000060896 BicraF8VPZ9 1578 aa10.32□□□□□ -0.76
Col6a6-201ENSMUST00000060896 Fam50aQ9WV03 339 aaKnown RBP10.3□□□□□ -0.76
Col6a6-201ENSMUST00000060896 Lmod2Q3UHZ5 550 aa10.28□□□□□ -0.76
Col6a6-201ENSMUST00000060896 Cecr2E9Q2Z1 1453 aa10.25□□□□□ -0.77
Col6a6-201ENSMUST00000060896 Ccdc88bQ4QRL3 1481 aa10.25□□□□□ -0.77
Col6a6-201ENSMUST00000060896 Golga3P55937 1487 aa10.23□□□□□ -0.77
Col6a6-201ENSMUST00000060896 Eid3Q3V124 375 aa10.23□□□□□ -0.77
Col6a6-201ENSMUST00000060896 Npm1Q61937 292 aaKnown RBP10.2□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Atad2bE9Q166 1460 aaKnown RBP10.19□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Ercc6F8VPZ5 1481 aa10.16□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Sall2Q9QX96 1004 aa10.16□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Clip1Q922J3 1391 aa10.16□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Slc24a1Q91WD8 1130 aa10.16□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Mapk8ip2Q9ERE9 830 aa10.15□□□□□ -0.78
Col6a6-201ENSMUST00000060896 Neurod1Q60867 357 aa10.14□□□□□ -0.79
Col6a6-201ENSMUST00000060896 TonslQ6NZL6 1363 aa10.13□□□□□ -0.79
Col6a6-201ENSMUST00000060896 Smarca2Q6DIC0 1577 aa10.12□□□□□ -0.79
Col6a6-201ENSMUST00000060896 Ubl4bQ9CQ84 188 aa10.12□□□□□ -0.79
Col6a6-201ENSMUST00000060896 NclP09405 707 aaKnown RBP10.08□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Baz1bQ9Z277 1479 aa10.08□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Cdk11bP24788 784 aaKnown RBP10.07□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Nop58Q6DFW4 536 aaKnown RBP10.07□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Smarca4Q3TKT4 1613 aaKnown RBP10.05□□□□□ -0.8
Col6a6-201ENSMUST00000060896 CftrP26361 1476 aa10.05□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Kif15Q6P9L6 1387 aa10.05□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Synj1Q8CHC4 1574 aa10.04□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Aebp2Q9Z248 504 aaKnown RBP10.04□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Zbtb7cQ8VCZ7 619 aa10.03□□□□□ -0.8
Col6a6-201ENSMUST00000060896 Fkbp15Q6P9Q6 1216 aaKnown RBP9.98□□□□□ -0.81
Col6a6-201ENSMUST00000060896 Setd5Q5XJV7 1441 aa9.96□□□□□ -0.81
Col6a6-201ENSMUST00000060896 Chic2Q9D9G3 165 aa9.96□□□□□ -0.82
Col6a6-201ENSMUST00000060896 DiexfQ8BTT6 772 aaKnown RBP9.95□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Thoc2B1AZI6 1594 aaKnown RBP9.95□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Phldb1Q6PDH0 1371 aaKnown RBP9.95□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Iqgap2Q3UQ44 1575 aa9.95□□□□□ -0.82
Col6a6-201ENSMUST00000060896 BlmO88700 1416 aa9.95□□□□□ -0.82
Col6a6-201ENSMUST00000060896 ClspnQ80YR7 1315 aa9.94□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Gm38655A0A286YDK6 273 aa9.94□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Ifnlr1Q8CGK5 535 aa9.93□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Cep162Q6ZQ06 1403 aa9.91□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Zbtb4Q5F293 982 aa9.9□□□□□ -0.82
Col6a6-201ENSMUST00000060896 Myt1Q8CFC2 1127 aa9.89□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Rapgef2Q8CHG7 1496 aa9.88□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Fmn1Q05860 1466 aa9.87□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Eif5bQ05D44 1216 aaKnown RBP9.86□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Fam135aQ6NS59 1506 aa9.84□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Wdr62Q3U3T8 1523 aa9.84□□□□□ -0.83
Col6a6-201ENSMUST00000060896 Csrnp3P59055 597 aa9.83□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Eea1Q8BL66 1411 aa9.83□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Cc2d2aQ8CFW7 1633 aa9.83□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Cttnbp2B9EJA2 1648 aa9.82□□□□□ -0.84
Col6a6-201ENSMUST00000060896 CenpbP27790 599 aa9.82□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Hnrnpul2Q00PI9 745 aaKnown RBP9.81□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Frmpd1A2AKB4 1549 aa9.8□□□□□ -0.84
Col6a6-201ENSMUST00000060896 Dnajc5bQ9CQ94 199 aa9.8□□□□□ -0.84
Retrieved 100 of 22,080 RNA–protein pairs in 14.3 ms