RNA–Protein interactions for RNA: ENSMUST00000029222.7

Ccdc39-201, Transcript of Coiled-coil domain-containing protein 39, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc39, Length 3,606 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc39-201ENSMUST00000029222 NischQ80TM9 1593 aa15.05■□□□□ -0
Ccdc39-201ENSMUST00000029222 Rhox8Q6VSS7 320 aa14.65□□□□□ -0.06
Ccdc39-201ENSMUST00000029222 Abcc9P70170 1546 aa14.4□□□□□ -0.1
Ccdc39-201ENSMUST00000029222 Gm35339A0A140LHH9 1649 aa14.32□□□□□ -0.12
Ccdc39-201ENSMUST00000029222 Abcc8B2RUS7 1588 aa14.22□□□□□ -0.13
Ccdc39-201ENSMUST00000029222 Ccdc136Q3TVA9 1136 aa13.53□□□□□ -0.24
Ccdc39-201ENSMUST00000029222 ScribQ80U72 1612 aa13.26□□□□□ -0.29
Ccdc39-201ENSMUST00000029222 Zcchc6Q5BLK4 1491 aaKnown RBP13.17□□□□□ -0.3
Ccdc39-201ENSMUST00000029222 Rb1cc1Q9ESK9 1588 aa13.16□□□□□ -0.3
Ccdc39-201ENSMUST00000029222 Kdm5dQ62240 1548 aa13.15□□□□□ -0.3
Ccdc39-201ENSMUST00000029222 NacadQ5SWP3 1504 aa13.11□□□□□ -0.31
Ccdc39-201ENSMUST00000029222 Trim41Q5NCC3 630 aa13.04□□□□□ -0.32
Ccdc39-201ENSMUST00000029222 Dcaf1Q80TR8 1506 aa13.02□□□□□ -0.33
Ccdc39-201ENSMUST00000029222 Cngb1E1AZ71 1325 aa13□□□□□ -0.33
Ccdc39-201ENSMUST00000029222 Rtl1Q7M732 1744 aa12.99□□□□□ -0.33
Ccdc39-201ENSMUST00000029222 Esf1Q3V1V3 845 aaKnown RBP12.98□□□□□ -0.33
Ccdc39-201ENSMUST00000029222 Ccdc180J3QNE4 1664 aa12.93□□□□□ -0.34
Ccdc39-201ENSMUST00000029222 Baz1aO88379 1555 aa12.92□□□□□ -0.34
Ccdc39-201ENSMUST00000029222 Ehmt2Q9Z148 1263 aaKnown RBP12.85□□□□□ -0.35
Ccdc39-201ENSMUST00000029222 Gab3Q8BSM5 595 aa12.79□□□□□ -0.36
Ccdc39-201ENSMUST00000029222 Sycp2Q9CUU3 1500 aa12.78□□□□□ -0.36
Ccdc39-201ENSMUST00000029222 HrcG5E8J6 738 aa12.68□□□□□ -0.38
Ccdc39-201ENSMUST00000029222 Brd4Q9ESU6 1400 aaKnown RBP12.56□□□□□ -0.4
Ccdc39-201ENSMUST00000029222 Crybg2B7ZCC2 1516 aa12.56□□□□□ -0.4
Ccdc39-201ENSMUST00000029222 Cecr2E9Q2Z1 1453 aa12.56□□□□□ -0.4
Ccdc39-201ENSMUST00000029222 Chic1Q8CBW7 227 aa12.52□□□□□ -0.4
Ccdc39-201ENSMUST00000029222 Smarca2Q6DIC0 1577 aa12.52□□□□□ -0.41
Ccdc39-201ENSMUST00000029222 Il27Q8K3I6 234 aa12.48□□□□□ -0.41
Ccdc39-201ENSMUST00000029222 Myt1lP97500 1187 aa12.44□□□□□ -0.42
Ccdc39-201ENSMUST00000029222 BicraF8VPZ9 1578 aa12.43□□□□□ -0.42
Ccdc39-201ENSMUST00000029222 Npm2Q80W85 207 aa12.42□□□□□ -0.42
Ccdc39-201ENSMUST00000029222 Zeb1Q64318 1117 aa12.33□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 CftrP26361 1476 aa12.3□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 Golga3P55937 1487 aa12.3□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 Synj1Q8CHC4 1574 aa12.3□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 Rsf1E9PWW9 1441 aaKnown RBP12.29□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 Cep164Q5DU05 1446 aa12.28□□□□□ -0.44
Ccdc39-201ENSMUST00000029222 Ccdc88bQ4QRL3 1481 aa12.24□□□□□ -0.45
Ccdc39-201ENSMUST00000029222 Pds5bQ4VA53 1446 aaKnown RBP12.22□□□□□ -0.45
Ccdc39-201ENSMUST00000029222 Smarca4Q3TKT4 1613 aaKnown RBP12.2□□□□□ -0.46
Ccdc39-201ENSMUST00000029222 Ubl4bQ9CQ84 188 aa12.18□□□□□ -0.46
Ccdc39-201ENSMUST00000029222 Atad2bE9Q166 1460 aaKnown RBP12.17□□□□□ -0.46
Ccdc39-201ENSMUST00000029222 UbtfP25976 765 aaKnown RBP12.12□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Npm1Q61937 292 aaKnown RBP12.12□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Acin1Q9JIX8 1338 aaKnown RBP12.11□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Iqgap2Q3UQ44 1575 aa12.1□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Kif15Q6P9L6 1387 aa12.1□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Rpgrip1Q9EPQ2 1331 aa12.1□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Ercc6F8VPZ5 1481 aa12.09□□□□□ -0.47
Ccdc39-201ENSMUST00000029222 Ap3b1Q9Z1T1 1105 aa12.08□□□□□ -0.48
Ccdc39-201ENSMUST00000029222 Cttnbp2B9EJA2 1648 aa12.07□□□□□ -0.48
Ccdc39-201ENSMUST00000029222 Fmn1Q05860 1466 aa11.96□□□□□ -0.49
Ccdc39-201ENSMUST00000029222 Plekhg3Q4VAC9 1341 aa11.95□□□□□ -0.5
Ccdc39-201ENSMUST00000029222 Frmpd1A2AKB4 1549 aa11.93□□□□□ -0.5
Ccdc39-201ENSMUST00000029222 Cc2d2aQ8CFW7 1633 aa11.89□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Phldb1Q6PDH0 1371 aaKnown RBP11.89□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Dnajc5bQ9CQ94 199 aa11.88□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Mier1Q5UAK0 511 aa11.87□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Clip1Q922J3 1391 aa11.85□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Cux2P70298 1426 aa11.85□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Lmod2Q3UHZ5 550 aa11.84□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Ccdc18Q640L5 1455 aa11.84□□□□□ -0.51
Ccdc39-201ENSMUST00000029222 Top2bQ64511 1612 aa11.82□□□□□ -0.52
Ccdc39-201ENSMUST00000029222 Wdr62Q3U3T8 1523 aa11.82□□□□□ -0.52
Ccdc39-201ENSMUST00000029222 Rapgef2Q8CHG7 1496 aa11.81□□□□□ -0.52
Ccdc39-201ENSMUST00000029222 Cep162Q6ZQ06 1403 aa11.81□□□□□ -0.52
Ccdc39-201ENSMUST00000029222 Ube2uB1AUC4 352 aa11.77□□□□□ -0.53
Ccdc39-201ENSMUST00000029222 Fam50aQ9WV03 339 aaKnown RBP11.73□□□□□ -0.53
Ccdc39-201ENSMUST00000029222 Setd5Q5XJV7 1441 aa11.72□□□□□ -0.53
Ccdc39-201ENSMUST00000029222 Top2aQ01320 1528 aaKnown RBP11.72□□□□□ -0.53
Ccdc39-201ENSMUST00000029222 NefmP08553 848 aa11.71□□□□□ -0.53
Ccdc39-201ENSMUST00000029222 Wdr66E9Q743 1299 aa11.69□□□□□ -0.54
Ccdc39-201ENSMUST00000029222 PtprkP35822 1457 aa11.68□□□□□ -0.54
Ccdc39-201ENSMUST00000029222 LrpprcQ6PB66 1392 aaKnown RBP11.68□□□□□ -0.54
Ccdc39-201ENSMUST00000029222 Las1lA2BE28 776 aaKnown RBP11.67□□□□□ -0.54
Ccdc39-201ENSMUST00000029222 Baz1bQ9Z277 1479 aa11.64□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Dhx29Q6PGC1 1365 aaKnown RBP11.64□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Eea1Q8BL66 1411 aa11.63□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 BlmO88700 1416 aa11.62□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Fkbp15Q6P9Q6 1216 aaKnown RBP11.61□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Lamc3Q9R0B6 1581 aa11.61□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Ppargc1bQ8VHJ7 1014 aa11.6□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Eid3Q3V124 375 aa11.6□□□□□ -0.55
Ccdc39-201ENSMUST00000029222 Camsap1A2AHC3 1581 aa11.57□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Shroom4Q1W617 1475 aa11.56□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Grin2bQ01097 1482 aa11.56□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Arhgap35Q91YM2 1499 aa11.56□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Supt5hO55201 1082 aaKnown RBP11.54□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Thoc2B1AZI6 1594 aaKnown RBP11.54□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Duox2A2AQ99 1517 aa11.54□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Pcgf6Q99NA9 353 aa11.54□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Arhgap27A2AB59 869 aa11.53□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Rad54l2Q99NG0 1466 aa11.53□□□□□ -0.56
Ccdc39-201ENSMUST00000029222 Ifnlr1Q8CGK5 535 aa11.52□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 NrkQ9R0G8 1455 aa11.52□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 Efcab5A0JP43 1406 aa11.51□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 PogzQ8BZH4 1409 aaKnown RBP11.51□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 Mrc2Q64449 1479 aa11.51□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 Aebp1Q640N1 1128 aa11.5□□□□□ -0.57
Ccdc39-201ENSMUST00000029222 TnnQ80Z71 1560 aa11.49□□□□□ -0.57
Retrieved 100 of 22,080 RNA–protein pairs in 12.5 ms