RNA–Protein interactions for RNA: ENSMUST00000001818.4

Crnkl1-201, Transcript of Crooked neck-like protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Crnkl1, Length 3,428 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Crnkl1-201ENSMUST00000001818 NischQ80TM9 1593 aa15.11■□□□□ 0.01
Crnkl1-201ENSMUST00000001818 Gm35339A0A140LHH9 1649 aa14.69□□□□□ -0.06
Crnkl1-201ENSMUST00000001818 Abcc9P70170 1546 aa14.5□□□□□ -0.09
Crnkl1-201ENSMUST00000001818 Abcc8B2RUS7 1588 aa14.4□□□□□ -0.1
Crnkl1-201ENSMUST00000001818 Rhox8Q6VSS7 320 aa14.13□□□□□ -0.15
Crnkl1-201ENSMUST00000001818 ScribQ80U72 1612 aa13.6□□□□□ -0.23
Crnkl1-201ENSMUST00000001818 NacadQ5SWP3 1504 aa13.36□□□□□ -0.27
Crnkl1-201ENSMUST00000001818 Kdm5dQ62240 1548 aa13.36□□□□□ -0.27
Crnkl1-201ENSMUST00000001818 Dcaf1Q80TR8 1506 aa13.2□□□□□ -0.3
Crnkl1-201ENSMUST00000001818 Rb1cc1Q9ESK9 1588 aa13.18□□□□□ -0.3
Crnkl1-201ENSMUST00000001818 Ccdc136Q3TVA9 1136 aa13.12□□□□□ -0.31
Crnkl1-201ENSMUST00000001818 Zcchc6Q5BLK4 1491 aaKnown RBP13.08□□□□□ -0.32
Crnkl1-201ENSMUST00000001818 Sycp2Q9CUU3 1500 aa13.04□□□□□ -0.32
Crnkl1-201ENSMUST00000001818 Baz1aO88379 1555 aa12.97□□□□□ -0.33
Crnkl1-201ENSMUST00000001818 BicraF8VPZ9 1578 aa12.75□□□□□ -0.37
Crnkl1-201ENSMUST00000001818 Crybg2B7ZCC2 1516 aa12.74□□□□□ -0.37
Crnkl1-201ENSMUST00000001818 Trim41Q5NCC3 630 aa12.74□□□□□ -0.37
Crnkl1-201ENSMUST00000001818 Esf1Q3V1V3 845 aaKnown RBP12.72□□□□□ -0.37
Crnkl1-201ENSMUST00000001818 Ccdc180J3QNE4 1664 aa12.63□□□□□ -0.39
Crnkl1-201ENSMUST00000001818 Cecr2E9Q2Z1 1453 aa12.6□□□□□ -0.39
Crnkl1-201ENSMUST00000001818 Cngb1E1AZ71 1325 aa12.6□□□□□ -0.39
Crnkl1-201ENSMUST00000001818 Rtl1Q7M732 1744 aa12.59□□□□□ -0.39
Crnkl1-201ENSMUST00000001818 Ehmt2Q9Z148 1263 aaKnown RBP12.57□□□□□ -0.4
Crnkl1-201ENSMUST00000001818 Smarca2Q6DIC0 1577 aa12.56□□□□□ -0.4
Crnkl1-201ENSMUST00000001818 Pds5bQ4VA53 1446 aaKnown RBP12.51□□□□□ -0.41
Crnkl1-201ENSMUST00000001818 Brd4Q9ESU6 1400 aaKnown RBP12.48□□□□□ -0.41
Crnkl1-201ENSMUST00000001818 Atad2bE9Q166 1460 aaKnown RBP12.42□□□□□ -0.42
Crnkl1-201ENSMUST00000001818 Smarca4Q3TKT4 1613 aaKnown RBP12.38□□□□□ -0.43
Crnkl1-201ENSMUST00000001818 Dnajc5bQ9CQ94 199 aa12.34□□□□□ -0.43
Crnkl1-201ENSMUST00000001818 CftrP26361 1476 aa12.33□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Ercc6F8VPZ5 1481 aa12.31□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Synj1Q8CHC4 1574 aa12.3□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Ubl4bQ9CQ84 188 aa12.3□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Iqgap2Q3UQ44 1575 aa12.29□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Il27Q8K3I6 234 aa12.28□□□□□ -0.44
Crnkl1-201ENSMUST00000001818 Gab3Q8BSM5 595 aa12.26□□□□□ -0.45
Crnkl1-201ENSMUST00000001818 Cttnbp2B9EJA2 1648 aa12.16□□□□□ -0.46
Crnkl1-201ENSMUST00000001818 Chic1Q8CBW7 227 aa12.16□□□□□ -0.46
Crnkl1-201ENSMUST00000001818 HrcG5E8J6 738 aa12.16□□□□□ -0.46
Crnkl1-201ENSMUST00000001818 Frmpd1A2AKB4 1549 aa12.16□□□□□ -0.46
Crnkl1-201ENSMUST00000001818 Golga3P55937 1487 aa12.15□□□□□ -0.46
Crnkl1-201ENSMUST00000001818 Phldb1Q6PDH0 1371 aaKnown RBP12.13□□□□□ -0.47
Crnkl1-201ENSMUST00000001818 Npm1Q61937 292 aaKnown RBP12.11□□□□□ -0.47
Crnkl1-201ENSMUST00000001818 Kif15Q6P9L6 1387 aa12.11□□□□□ -0.47
Crnkl1-201ENSMUST00000001818 Wdr62Q3U3T8 1523 aa12.08□□□□□ -0.48
Crnkl1-201ENSMUST00000001818 Rsf1E9PWW9 1441 aaKnown RBP12.07□□□□□ -0.48
Crnkl1-201ENSMUST00000001818 Cc2d2aQ8CFW7 1633 aa12.05□□□□□ -0.48
Crnkl1-201ENSMUST00000001818 Npm2Q80W85 207 aa12.04□□□□□ -0.48
Crnkl1-201ENSMUST00000001818 Thoc2B1AZI6 1594 aaKnown RBP12.02□□□□□ -0.49
Crnkl1-201ENSMUST00000001818 Zeb1Q64318 1117 aa12.01□□□□□ -0.49
Crnkl1-201ENSMUST00000001818 Ccdc88bQ4QRL3 1481 aa11.99□□□□□ -0.49
Crnkl1-201ENSMUST00000001818 Myt1lP97500 1187 aa11.96□□□□□ -0.49
Crnkl1-201ENSMUST00000001818 Cux2P70298 1426 aa11.95□□□□□ -0.5
Crnkl1-201ENSMUST00000001818 Fmn1Q05860 1466 aa11.89□□□□□ -0.51
Crnkl1-201ENSMUST00000001818 Cep164Q5DU05 1446 aa11.87□□□□□ -0.51
Crnkl1-201ENSMUST00000001818 Fam135aQ6NS59 1506 aa11.85□□□□□ -0.51
Crnkl1-201ENSMUST00000001818 Ccdc18Q640L5 1455 aa11.85□□□□□ -0.51
Crnkl1-201ENSMUST00000001818 Top2bQ64511 1612 aa11.82□□□□□ -0.52
Crnkl1-201ENSMUST00000001818 Mrc2Q64449 1479 aa11.8□□□□□ -0.52
Crnkl1-201ENSMUST00000001818 Lamc3Q9R0B6 1581 aa11.75□□□□□ -0.53
Crnkl1-201ENSMUST00000001818 Unc13aQ4KUS2 1712 aa11.74□□□□□ -0.53
Crnkl1-201ENSMUST00000001818 LrpprcQ6PB66 1392 aaKnown RBP11.74□□□□□ -0.53
Crnkl1-201ENSMUST00000001818 Dhx29Q6PGC1 1365 aaKnown RBP11.72□□□□□ -0.53
Crnkl1-201ENSMUST00000001818 Acin1Q9JIX8 1338 aaKnown RBP11.71□□□□□ -0.54
Crnkl1-201ENSMUST00000001818 Ap3b1Q9Z1T1 1105 aa11.65□□□□□ -0.54
Crnkl1-201ENSMUST00000001818 Camsap1A2AHC3 1581 aa11.64□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 Top2aQ01320 1528 aaKnown RBP11.63□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 UbtfP25976 765 aaKnown RBP11.63□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 TnnQ80Z71 1560 aa11.61□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 PtprkP35822 1457 aa11.6□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 Duox2A2AQ99 1517 aa11.59□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 PogzQ8BZH4 1409 aaKnown RBP11.59□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 Rapgef2Q8CHG7 1496 aa11.59□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 Grin2bQ01097 1482 aa11.58□□□□□ -0.55
Crnkl1-201ENSMUST00000001818 Baz1bQ9Z277 1479 aa11.58□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Urb2E9Q7L1 1524 aaKnown RBP11.57□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Plb1Q3TTY0 1478 aa11.57□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Rpgrip1Q9EPQ2 1331 aa11.56□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Cep162Q6ZQ06 1403 aa11.55□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Efcab5A0JP43 1406 aa11.55□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Kif21aQ9QXL2 1672 aa11.53□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Rad54l2Q99NG0 1466 aa11.53□□□□□ -0.56
Crnkl1-201ENSMUST00000001818 Shroom4Q1W617 1475 aa11.52□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 NrkQ9R0G8 1455 aa11.51□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Clip1Q922J3 1391 aa11.49□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Pelp1Q9DBD5 1123 aaKnown RBP11.49□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Crocc2F6XLV1 1638 aa11.48□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Plekhg3Q4VAC9 1341 aa11.47□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Arhgap27A2AB59 869 aa11.47□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Lmod2Q3UHZ5 550 aa11.46□□□□□ -0.57
Crnkl1-201ENSMUST00000001818 Fkbp15Q6P9Q6 1216 aaKnown RBP11.45□□□□□ -0.58
Crnkl1-201ENSMUST00000001818 Mier1Q5UAK0 511 aa11.44□□□□□ -0.58
Crnkl1-201ENSMUST00000001818 Setd5Q5XJV7 1441 aa11.43□□□□□ -0.58
Crnkl1-201ENSMUST00000001818 Arhgap35Q91YM2 1499 aa11.42□□□□□ -0.58
Crnkl1-201ENSMUST00000001818 Ifnlr1Q8CGK5 535 aa11.4□□□□□ -0.58
Crnkl1-201ENSMUST00000001818 Mroh2bQ7M6Y6 1581 aa11.39□□□□□ -0.59
Crnkl1-201ENSMUST00000001818 Carmil1Q6EDY6 1374 aa11.39□□□□□ -0.59
Crnkl1-201ENSMUST00000001818 Lrriq1Q0P5X1 1673 aa11.39□□□□□ -0.59
Crnkl1-201ENSMUST00000001818 Ppargc1bQ8VHJ7 1014 aa11.39□□□□□ -0.59
Crnkl1-201ENSMUST00000001818 Ift140E9PY46 1464 aa11.38□□□□□ -0.59
Retrieved 100 of 22,080 RNA–protein pairs in 28.5 ms