RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HIBCHQ6NVY1 386 aaPredicted RBP17.53■□□□□ 0.4
COL9A3-214ENST00000490398 CNSTQ6PJW8 725 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 C6orf15Q6UXA7 325 aaPredicted RBP17.53■□□□□ 0.4
COL9A3-214ENST00000490398 UNC5DQ6UXZ4 953 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 CDHR3Q6ZTQ4 885 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 OTOAQ7RTW8 1153 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 TAX1BP1Q86VP1 789 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 HOOK3Q86VS8 718 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 OR1L3Q8NH93 324 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 SLC39A7Q92504 469 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 TUBB2BQ9BVA1 445 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 PDE7BQ9NP56 450 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 IARS2Q9NSE4 1012 aaKnown RBP17.53■□□□□ 0.4
COL9A3-214ENST00000490398 FAM169AQ9Y6X4 670 aa17.53■□□□□ 0.4
COL9A3-214ENST00000490398 MATN2O00339 956 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 C1QL1O75973 258 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 HAUS5O94927 633 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 C1orf105O95561 183 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 ERVK-10P10266 1014 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 PGAM1P18669 254 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 CHRM3P20309 590 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 GABRB3P28472 473 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 CLCN7P51798 805 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 ITGA8P53708 1063 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 ADARP55265 1226 aaKnown RBP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 ABHD18Q0P651 414 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 TMED2Q15363 201 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 PLEKHS1Q5SXH7 462 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 ATP1A1-AS1Q5TC04 95 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 FAM199XQ6PEV8 388 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 SYT10Q6XYQ8 523 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 CARFQ8N187 725 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 EXTL1Q92935 676 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 EBNA1BP2Q99848 306 aaKnown RBP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 GPN2Q9H9Y4 310 aaPredicted RBP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 INTS10Q9NVR2 710 aaKnown RBP17.52■□□□□ 0.4
COL9A3-214ENST00000490398 OR6C2Q9NZP2 312 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 CROTQ9UKG9 612 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 SNX24Q9Y343 169 aa17.52■□□□□ 0.4
COL9A3-214ENST00000490398 SPENQ96T58 3664 aaKnown RBP17.52■□□□□ 0.39
COL9A3-214ENST00000490398 ERVH48-1M5A8F1 160 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 PAFAH1B1P43034 410 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 RAB28P51157 221 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 TIAL1Q01085 375 aaKnown RBP eCLIP17.51■□□□□ 0.39
COL9A3-214ENST00000490398 MAP7Q14244 749 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 TBR1Q16650 682 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 DEFB110Q30KQ9 67 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 TMTC4Q5T4D3 741 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 SYDE1Q6ZW31 735 aaPredicted RBP17.51■□□□□ 0.39
COL9A3-214ENST00000490398 PCGF5Q86SE9 256 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 KCNMB4Q86W47 210 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 DCUN1D3Q8IWE4 304 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 ZBTB2Q8N680 514 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 ESX1Q8N693 406 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 EXD3Q8N9H8 876 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 DENND1AQ8TEH3 1009 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 SKA2Q8WVK7 121 aaPredicted RBP17.51■□□□□ 0.39
COL9A3-214ENST00000490398 LATS2Q9NRM7 1088 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 FBXO5Q9UKT4 447 aa17.51■□□□□ 0.39
COL9A3-214ENST00000490398 ISM1B1AKI9 464 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 CCDC188H7C350 402 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 SCRG1O75711 98 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 SEC31AO94979 1220 aaKnown RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 CD9P21926 228 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 DLSTP36957 453 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 ELK3P41970 407 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 RPL21P46778 160 aaKnown RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 GABRA4P48169 554 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 ETF1P62495 437 aaKnown RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 C2orf54Q08AI8 447 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 GPS2Q13227 327 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 CUL1Q13616 776 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 MORF4L2Q15014 288 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 TAF1BQ53T94 588 aaPredicted RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 LCN10Q6JVE6 187 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 C19orf47Q8N9M1 422 aaKnown RBP17.5■□□□□ 0.39
COL9A3-214ENST00000490398 CT55Q8WUE5 264 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 SLC45A3Q96JT2 553 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 CHMP2BQ9UQN3 213 aa17.5■□□□□ 0.39
COL9A3-214ENST00000490398 A0A0J9YY10 115 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 TMEM150CB9EJG8 249 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 H3BMM5 538 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 RASGRF2O14827 1237 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 KPNA5O15131 536 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 PRICKLE3O43900 615 aaPredicted RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 MATN4O95460 622 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 PRKAR1AP10644 381 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 OAS2P29728 719 aaKnown RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 CASQ1P31415 396 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 CARSP49589 748 aaKnown RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 PGGT1BP53609 377 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 YBX1P67809 324 aaKnown RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 FASTKD3Q14CZ7 662 aaKnown RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 KLHL38Q2WGJ6 581 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 SPANXN3Q5MJ09 141 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 TRMT10BQ6PF06 316 aaKnown RBP17.49■□□□□ 0.39
COL9A3-214ENST00000490398 TMEM126BQ8IUX1 230 aa17.49■□□□□ 0.39
COL9A3-214ENST00000490398 ANKMY2Q8IV38 441 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms