RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RPS6KA6Q9UK32 745 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CPQQ9Y646 472 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 WNK3Q9BYP7 1800 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CHRNA1P02708 482 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CHRM5P08912 532 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 MTHFD2P13995 350 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 TAF1AQ15573 450 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 OR4F3Q6IEY1 312 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ELMSAN1Q6PJG2 1045 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 OR2T11Q8NH01 316 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 DMRTB1Q96MA1 342 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 KCNC2Q96PR1 638 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 PRDM5Q9NQX1 630 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 FARSBQ9NSD9 589 aaKnown RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 ABCD2Q9UBJ2 740 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 FCF1Q9Y324 198 aaKnown RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 CAB39Q9Y376 341 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 PHIPQ8WWQ0 1821 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 PNMA8CA0A1B0GUJ8 204 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 HTR3EA5X5Y0 456 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 SYNDIG1LA6NDD5 238 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ZNF197O14709 1029 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ESR1P03372 595 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ALPLP05186 524 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 IL6P05231 212 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 FABP3P05413 133 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 GSTT2P0CG29 244 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 GSTT2BP0CG30 244 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 HRH2P25021 359 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 HOXD12P35452 270 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 PIGAP37287 484 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 GJA8P48165 433 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CD300CQ08708 224 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 MAP2K5Q13163 448 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 PON2Q15165 354 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 USP41Q3LFD5 358 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 RAB41Q5JT25 222 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 DEPDC1Q5TB30 811 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 OTULINQ96BN8 352 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 ZNF419Q96HQ0 510 aaPredicted RBP12.35□□□□□ -0.43
LIG1-221ENST00000613670 DEPDC7Q96QD5 511 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 CCNB1IP1Q9NPC3 277 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 GKN1Q9NS71 199 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 QSER1Q2KHR3 1735 aa12.35□□□□□ -0.43
LIG1-221ENST00000613670 EFCAB10A6NFE3 127 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 FAM155AB1AL88 458 aaPredicted RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 STX16O14662 325 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 GGT1P19440 569 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 DCTP40126 519 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 GPR162Q16538 588 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 SMN1Q16637 294 aaKnown RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 MBOAT1Q6ZNC8 495 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 UBE2J2Q8N2K1 259 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TTC9BQ8N6N2 239 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 RPL3LQ92901 407 aaKnown RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 LGALS12Q96DT0 336 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 KCNS3Q9BQ31 491 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 PRDM8Q9NQV8 689 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TMEM248Q9NWD8 314 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 KCNH4Q9UQ05 1017 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 ARIH1Q9Y4X5 557 aaPredicted RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 MCM3APO60318 1980 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 LOC110117498-PIK3R3F6TDL0 507 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 FPGTO14772 594 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 ACOX3O15254 700 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 CELF2O95319 508 aaKnown RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 CCDC159P0C7I6 412 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 AKR1A1P14550 325 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 PBLDP30039 288 aaPredicted RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 IDUAP35475 653 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 BCL2L1Q07817 233 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 SYTL3Q4VX76 610 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 MFSD14CQ5VZR4 134 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 OR2T5Q6IEZ7 315 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 ARMC8Q8IUR7 673 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 OR2T29Q8NH02 315 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 CHPT1Q8WUD6 406 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TRIM39Q9HCM9 518 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 AASDHPPTQ9NRN7 309 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 SNX6Q9UNH7 406 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 C5orf58C9J3I9 102 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 SERPINB7O75635 380 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 OPN1SWP03999 348 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 LCKP06239 509 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TYMPP19971 482 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 PTGER3P43115 390 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 PSMD8P48556 350 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 RPL34P49207 117 aaKnown RBP12.34□□□□□ -0.43
LIG1-221ENST00000613670 RPIAP49247 311 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 CTBSQ01459 385 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TAB1Q15750 504 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 BTLAQ7Z6A9 289 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 NELL1Q92832 810 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 ZNF382Q96SR6 550 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 TRPM5Q9NZQ8 1165 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 UTS2RQ9UKP6 389 aa12.34□□□□□ -0.43
LIG1-221ENST00000613670 H3BN98 237 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 CAPN15O75808 1086 aa12.33□□□□□ -0.43
LIG1-221ENST00000613670 RECQLP46063 649 aaPredicted RBP12.33□□□□□ -0.43
LIG1-221ENST00000613670 SPIBQ01892 262 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms