RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 LAMB3Q13751 1172 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 BOP1Q14137 746 aaKnown RBP18.15■□□□□ 0.5
PNKP-213ENST00000599543 ITIH4Q14624 930 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 HOOK3Q86VS8 718 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 DSELQ8IZU8 1212 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 DNAAF3Q8N9W5 541 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 OR52K1Q8NGK4 314 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 OR1L3Q8NH93 324 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.15■□□□□ 0.5
PNKP-213ENST00000599543 NRTNQ99748 197 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 TRIM55Q9BYV6 548 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 XKR8Q9H6D3 395 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 ACTR5Q9H9F9 607 aaPredicted RBP18.15■□□□□ 0.5
PNKP-213ENST00000599543 ACSS2Q9NR19 701 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 PAK5Q9P286 719 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 SERTAD3Q9UJW9 196 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 SAR1BQ9Y6B6 198 aa18.15■□□□□ 0.5
PNKP-213ENST00000599543 PRRC2CQ9Y520 2896 aaKnown RBP18.15■□□□□ 0.5
PNKP-213ENST00000599543 ERI2A8K979 691 aaKnown RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 E7EVH7 732 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CES2O00748 559 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 PHF2O75151 1096 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CASQ1P31415 396 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 BASP1P80723 227 aaKnown RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 CDH17Q12864 832 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 SYTL3Q4VX76 610 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CCDC38Q502W7 563 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 PLEKHS1Q5SXH7 462 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CPZQ66K79 652 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CCDC137Q6PK04 289 aaKnown RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 PACS1Q6VY07 963 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 CREG2Q8IUH2 290 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 ENDOVQ8N8Q3 282 aaKnown RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 ELMO1Q92556 727 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 C16orf45Q96MC5 204 aaPredicted RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 TRAPPC9Q96Q05 1148 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 NAP1L3Q99457 506 aaPredicted RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 KLHL25Q9H0H3 589 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 DDX47Q9H0S4 455 aaKnown RBP18.14■□□□□ 0.49
PNKP-213ENST00000599543 HOMER3Q9NSC5 361 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 ACTR10Q9NZ32 417 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 ASF1AQ9Y294 204 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 FER1L5A0AVI2 2057 aa18.14■□□□□ 0.49
PNKP-213ENST00000599543 OR51F1A6NGY5 319 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ARGFXA6NJG6 315 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 E7EQ34 232 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 KRT14P02533 472 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 APRTP07741 180 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 RAB40ALP0C0E4 278 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PVRP15151 417 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 SHMT2P34897 504 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 RORAP35398 523 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 FDFT1P37268 417 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PGDP52209 483 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ITGA1P56199 1179 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ETF1P62495 437 aaKnown RBP18.13■□□□□ 0.49
PNKP-213ENST00000599543 CHAF1BQ13112 559 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 BRD3Q15059 726 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 CYP1B1Q16678 543 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ZNF789Q5FWF6 425 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 SPESP1Q6UW49 350 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PPP1R21Q6ZMI0 780 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 KLHL7Q8IXQ5 586 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 SYTL1Q8IYJ3 562 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ADGRF3Q8IZF5 1079 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 OR5AR1Q8NGP9 310 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 N4BP2L2Q92802 583 aaPredicted RBP18.13■□□□□ 0.49
PNKP-213ENST00000599543 NLNQ9BYT8 704 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ING2Q9H160 280 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PCMTD2Q9NV79 361 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 TCFL5Q9UL49 500 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 ICKQ9UPZ9 632 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PLAAQ9Y263 795 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 PRSS21Q9Y6M0 314 aa18.13■□□□□ 0.49
PNKP-213ENST00000599543 TCRBV7S3A2A0A539 114 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 HEATR9A2RTY3 570 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 CCDC162PA2VCL2 907 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 PDGFAP04085 211 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 OR56A5P0C7T3 313 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 FOXN2P32314 431 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 PLOD1Q02809 727 aaPredicted RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 GPS1Q13098 491 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 LCN10Q6JVE6 187 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 CDHR3Q6ZTQ4 885 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 GPR135Q8IZ08 494 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 C19orf47Q8N9M1 422 aaKnown RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 TTC1Q99614 292 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 DPH2Q9BQC3 489 aaPredicted RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 SLC25A23Q9BV35 468 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 POLG2Q9UHN1 485 aa18.12■□□□□ 0.49
PNKP-213ENST00000599543 TDRKHQ9Y2W6 561 aaKnown RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 PCDHGA9Q9Y5G4 932 aaKnown RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 USP9XQ93008 2570 aaPredicted RBP18.12■□□□□ 0.49
PNKP-213ENST00000599543 GOLGA6L10A0A0M3HER8 536 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 C9J4A7 227 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 F8W8V4 182 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 HBQ1P09105 142 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 PSMA3P25788 255 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 PTGIRP43119 386 aa18.11■□□□□ 0.49
PNKP-213ENST00000599543 CCL11P51671 97 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms