RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PLCB1Q9NQ66 1216 aa6.51□□□□□ -1.37
VIM-207ENST00000495528 ABCC13Q9NSE7 274 aa6.51□□□□□ -1.37
VIM-207ENST00000495528 OLA1Q9NTK5 396 aaKnown RBP6.51□□□□□ -1.37
VIM-207ENST00000495528 VPS51Q9UID3 782 aa6.51□□□□□ -1.37
VIM-207ENST00000495528 TSPAN16Q9UKR8 245 aa6.51□□□□□ -1.37
VIM-207ENST00000495528 INTS6Q9UL03 887 aaKnown RBP6.51□□□□□ -1.37
VIM-207ENST00000495528 NCKAP1Q9Y2A7 1128 aa6.51□□□□□ -1.37
VIM-207ENST00000495528 CKAP5Q14008 2032 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 MYH10P35580 1976 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 TTC34A8MYJ7 566 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 C10orf142B7Z368 130 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 SPRY2O43597 315 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 ACSL4O60488 711 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 RNASEH2AO75792 299 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 IGLV2-14P01704 120 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 PTMAP06454 111 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 TPM1P09493 284 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 UCHL3P15374 230 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 CREB1P16220 341 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 PECAM1P16284 738 aaPredicted RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 RBL1P28749 1068 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 CD38P28907 300 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 HNF1BP35680 557 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 CSKP41240 450 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 SLC8A3P57103 927 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 DAOAP59103 153 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 ADIGQ0VDE8 80 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 TBX2Q13207 712 aaPredicted RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 RAPGEF1Q13905 1077 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 DRAP1Q14919 205 aaPredicted RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 CST6Q15828 149 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 HNRNPA1L2Q32P51 320 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 FAM133BQ5BKY9 247 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 FSCBQ5H9T9 825 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 MPP7Q5T2T1 576 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 C9orf64Q5T6V5 341 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 HES3Q5TGS1 186 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 NADSYN1Q6IA69 706 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 MMS22LQ6ZRQ5 1243 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 MMAAQ8IVH4 418 aaKnown RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 MFN1Q8IWA4 741 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 SYTL1Q8IYJ3 562 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 TTC39CQ8N584 583 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 ZNF397Q8NF99 534 aaPredicted RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 FIBINQ8TAL6 211 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 UBA3Q8TBC4 463 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 SKA1Q96BD8 255 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 TIMP4Q99727 224 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 OMDQ99983 421 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 GANQ9H2C0 597 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 ZBTB26Q9HCK0 441 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 NKX1-2Q9UD57 310 aaPredicted RBP6.5□□□□□ -1.37
VIM-207ENST00000495528 SLCO3A1Q9UIG8 710 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 AMFRQ9UKV5 643 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 SCML1Q9UN30 329 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 ITIH6Q6UXX5 1313 aa6.5□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3DA0A087WVF3 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3IA0A087WXS9 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3EA0A087X179 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3KA0A087X1G2 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TARSL2A2RTX5 802 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3FA6NER0 549 aaPredicted RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 LRRC72A6NJI9 287 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 LRRC3CA6NJW4 275 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3LB9A6J9 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 AKR1B15C9JRZ8 316 aaPredicted RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 TLR4O00206 839 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 RRP8O43159 456 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 CCNT2O60583 730 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 RNASEH1O60930 286 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 CALCAP01258 141 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 IGLV3-27P01718 113 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 GYPCP04921 128 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3HP0C7X1 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 SETSIPP0DME0 302 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 CDK4P11802 303 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 SKILP12757 684 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 KRT5P13647 590 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 PLA2G2AP14555 144 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 CD19P15391 556 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 CKMT2P17540 419 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 EPHA8P29322 1005 aaPredicted RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 SLC8A1P32418 973 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 KRT9P35527 623 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 RXRGP48443 463 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 RGS7P49802 495 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 CCR5P51681 352 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 ST8SIA6P61647 398 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 RPS24P62847 133 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 ZBED6P86452 979 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 PSG6Q00889 435 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 BTKQ06187 659 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 BST2Q10589 180 aaKnown RBP6.49□□□□□ -1.37
VIM-207ENST00000495528 CUL2Q13617 745 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3GQ6DHY5 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 TBC1D3CQ6IPX1 549 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 MRNIPQ6NTE8 343 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 PMF1Q6P1K2 205 aa6.49□□□□□ -1.37
VIM-207ENST00000495528 MSANTD2Q6P1R3 559 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms