RNA–Protein interactions for RNA: ENST00000492650.1

VPS36-205, Transcript of vacuolar protein sorting 36 homolog, human

TSL 5

Gene VPS36, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS36-205	ENST00000492650	INTS6	Q9UL03	887 aa	Known RBP	3.18	□□□□□ -1.9
VPS36-205	ENST00000492650	CDH7	Q9ULB5	785 aa		3.18	□□□□□ -1.9
VPS36-205	ENST00000492650	FAF1	Q9UNN5	650 aa	Predicted RBP	3.18	□□□□□ -1.9
VPS36-205	ENST00000492650	KCNK7	Q9Y2U2	307 aa		3.18	□□□□□ -1.9
VPS36-205	ENST00000492650	ATP8B3	O60423	1300 aa		3.18	□□□□□ -1.9
VPS36-205	ENST00000492650	IGKV3D-15	A0A087WSY6	115 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650		A0A1B0GU03	582 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	EIF3CL	B5ME19	914 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	BOLA2-SMG1P6	H3BVE0	249 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CCDC188	H7C350	402 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	AP3B1	O00203	1094 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PES1	O00541	588 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CASQ2	O14958	399 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	VEGFD	O43915	354 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TSC22D2	O75157	780 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TADA2A	O75478	443 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	IPO7	O95373	1038 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PENK	P01210	267 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	IFNB1	P01574	187 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ZFY	P08048	801 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MMP2	P08253	660 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ZNF883	P0CG24	379 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	POU1F1	P28069	291 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ADSS	P30520	456 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MC5R	P33032	325 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MATR3	P43243	847 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RABIF	P47224	123 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	IFNAR2	P48551	515 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	SULT1E1	P49888	294 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	HNMT	P50135	292 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RAB28	P51157	221 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ATXN3	P54252	364 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PMP22	Q01453	160 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	GRIK3	Q13003	919 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PDK1	Q15118	436 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	FCN2	Q15485	313 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	LETM2	Q2VYF4	491 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MAJIN	Q3KP22	176 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ZNF667	Q5HYK9	610 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PDSS1	Q5T2R2	415 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	KRT79	Q5XKE5	535 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	KLHL10	Q6JEL2	608 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ANKRD54	Q6NXT1	300 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	KCTD8	Q6ZWB6	473 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MTSS1L	Q765P7	747 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	LPCAT2	Q7L5N7	544 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TADA2B	Q86TJ2	420 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	FOXRED2	Q8IWF2	684 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CHERP	Q8IWX8	916 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ZNF34	Q8IZ26	560 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MAML2	Q8IZL2	1156 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RNF113B	Q8IZP6	322 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CNBD1	Q8NA66	436 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CAMKV	Q8NCB2	501 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	OR52K2	Q8NGK3	314 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PSMA8	Q8TAA3	256 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TAS1R2	Q8TE23	839 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	GIMAP1	Q8WWP7	306 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ABTB1	Q969K4	478 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PTER	Q96BW5	349 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RUFY1	Q96T51	708 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PAFAH2	Q99487	392 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	SH3GL2	Q99962	352 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TCHP	Q9BT92	498 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	NUP85	Q9BW27	656 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RBM4	Q9BWF3	364 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	HEMGN	Q9BXL5	484 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TRIM7	Q9C029	511 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	VPS37B	Q9H9H4	285 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	MAGEE1	Q9HCI5	957 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	BPIFA1	Q9NP55	256 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	DDX4	Q9NQI0	724 aa	Known RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TMEM30A	Q9NV96	361 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	FAM118A	Q9NWS6	357 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ARHGEF38	Q9NXL2	777 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	AATF	Q9NY61	560 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	PSD3	Q9NYI0	1048 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	OGFR	Q9NZT2	677 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CNIH4	Q9P003	139 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	KIAA1456	Q9P272	454 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	ARMCX3	Q9UH62	379 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	TSPYL4	Q9UJ04	414 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	CHKB	Q9Y259	395 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	RPH3A	Q9Y2J0	694 aa	Predicted RBP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	AMDHD2	Q9Y303	409 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	LIPG	Q9Y5X9	500 aa		3.17	□□□□□ -1.9
VPS36-205	ENST00000492650	LOC102723996	A0A087X1L8	192 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	GPR75-ASB3	A0A0A6YYF3	556 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SYCE3	A1L190	88 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	HTR3E	A5X5Y0	456 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	OOEP	A6NGQ2	149 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	ERICH4	A6NGS2	130 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650		A6NL46	340 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	C2orf81	A6NN90	581 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	PMS2P5	A8MQ11	134 aa		3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	SLC33A1	O00400	549 aa	Predicted RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	IFIT3	O14879	490 aa	Known RBP	3.16	□□□□□ -1.9
VPS36-205	ENST00000492650	HS6ST1	O60243	411 aa		3.16	□□□□□ -1.9

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms