RNA–Protein interactions for RNA: ENST00000492650.1

VPS36-205, Transcript of vacuolar protein sorting 36 homolog, human

TSL 5

Gene VPS36, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS36-205	ENST00000492650	AEBP2	Q6ZN18	517 aa	Predicted RBP	22.12	■■□□□ 1.13
VPS36-205	ENST00000492650	CHIC1	Q5VXU3	224 aa		21.25	■□□□□ 0.99
VPS36-205	ENST00000492650	SENP3	Q9H4L4	574 aa	Predicted RBP	18.86	■□□□□ 0.61
VPS36-205	ENST00000492650	PHF23	Q9BUL5	403 aa	Predicted RBP	18.66	■□□□□ 0.58
VPS36-205	ENST00000492650	FOXD1	Q16676	465 aa		17.54	■□□□□ 0.4
VPS36-205	ENST00000492650	PLPPR3	Q6T4P5	718 aa		17.11	■□□□□ 0.33
VPS36-205	ENST00000492650	PPP6R1	Q9UPN7	881 aa		16.58	■□□□□ 0.24
VPS36-205	ENST00000492650	ADRA2B	P18089	450 aa		16.57	■□□□□ 0.24
VPS36-205	ENST00000492650	PIAS4	Q8N2W9	510 aa	Predicted RBP	16.48	■□□□□ 0.23
VPS36-205	ENST00000492650	MSH5	O43196	834 aa		16.34	■□□□□ 0.21
VPS36-205	ENST00000492650	POTED	Q86YR6	584 aa		15.99	■□□□□ 0.15
VPS36-205	ENST00000492650	SCAF1	Q9H7N4	1312 aa	Known RBP	15.18	■□□□□ 0.02
VPS36-205	ENST00000492650	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.15	■□□□□ 0.02
VPS36-205	ENST00000492650	PPP4R3CP	Q6ZMV5	832 aa		15.03	■□□□□ -0
VPS36-205	ENST00000492650	DMRT2	Q9Y5R5	561 aa		14.97	□□□□□ -0.01
VPS36-205	ENST00000492650	CNKSR2	Q8WXI2	1034 aa		14.69	□□□□□ -0.06
VPS36-205	ENST00000492650	NCBP3	Q53F19	620 aa	Known RBP	14.56	□□□□□ -0.08
VPS36-205	ENST00000492650	HOXD11	P31277	338 aa	Predicted RBP	14.5	□□□□□ -0.09
VPS36-205	ENST00000492650	RNF216	Q9NWF9	866 aa	Predicted RBP	14.48	□□□□□ -0.09
VPS36-205	ENST00000492650	DCAF8L1	A6NGE4	600 aa		14.46	□□□□□ -0.09
VPS36-205	ENST00000492650	NPM3	O75607	178 aa	Known RBP	14.31	□□□□□ -0.12
VPS36-205	ENST00000492650	KCNA4	P22459	653 aa		14.26	□□□□□ -0.13
VPS36-205	ENST00000492650	RNF39	Q9H2S5	420 aa		13.94	□□□□□ -0.18
VPS36-205	ENST00000492650	DNAJC5B	Q9UF47	199 aa		13.93	□□□□□ -0.18
VPS36-205	ENST00000492650	CACNB1	Q02641	598 aa	Predicted RBP	13.91	□□□□□ -0.18
VPS36-205	ENST00000492650	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
VPS36-205	ENST00000492650	C1QBP	Q07021	282 aa	Known RBP	13.77	□□□□□ -0.21
VPS36-205	ENST00000492650	SLC4A2	P04920	1241 aa		13.59	□□□□□ -0.23
VPS36-205	ENST00000492650		U3KPZ7	1027 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS36-205	ENST00000492650	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.53	□□□□□ -0.24
VPS36-205	ENST00000492650	CAPN15	O75808	1086 aa		13.35	□□□□□ -0.27
VPS36-205	ENST00000492650	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.33	□□□□□ -0.28
VPS36-205	ENST00000492650	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.31	□□□□□ -0.28
VPS36-205	ENST00000492650	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.31	□□□□□ -0.28
VPS36-205	ENST00000492650	APLP2	Q06481	763 aa		13.27	□□□□□ -0.29
VPS36-205	ENST00000492650	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.24	□□□□□ -0.29
VPS36-205	ENST00000492650	FOXD4L1	Q9NU39	408 aa		13.24	□□□□□ -0.29
VPS36-205	ENST00000492650	MYCN	P04198	464 aa	Predicted RBP	13.23	□□□□□ -0.29
VPS36-205	ENST00000492650	TRH	P20396	242 aa	Predicted RBP	13.19	□□□□□ -0.3
VPS36-205	ENST00000492650	DSG3	P32926	999 aa		13.15	□□□□□ -0.3
VPS36-205	ENST00000492650	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.14	□□□□□ -0.31
VPS36-205	ENST00000492650	ZBTB22	O15209	634 aa		13.09	□□□□□ -0.31
VPS36-205	ENST00000492650	ABCB7	O75027	752 aa		13.04	□□□□□ -0.32
VPS36-205	ENST00000492650	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.91	□□□□□ -0.34
VPS36-205	ENST00000492650	POLA2	Q14181	598 aa		12.87	□□□□□ -0.35
VPS36-205	ENST00000492650	ATXN8OS	P0DMR3	200 aa		12.79	□□□□□ -0.36
VPS36-205	ENST00000492650	EHMT2	Q96KQ7	1210 aa		12.75	□□□□□ -0.37
VPS36-205	ENST00000492650	CSRNP3	Q8WYN3	585 aa		12.72	□□□□□ -0.37
VPS36-205	ENST00000492650	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.61	□□□□□ -0.39
VPS36-205	ENST00000492650	RBM42	Q9BTD8	480 aa	Known RBP	12.55	□□□□□ -0.4
VPS36-205	ENST00000492650	FBLN2	P98095	1184 aa		12.43	□□□□□ -0.42
VPS36-205	ENST00000492650	OSCAR	Q8IYS5	282 aa		12.43	□□□□□ -0.42
VPS36-205	ENST00000492650	POTEH	Q6S545	545 aa		12.42	□□□□□ -0.42
VPS36-205	ENST00000492650	AKT1S1	Q96B36	256 aa		12.32	□□□□□ -0.44
VPS36-205	ENST00000492650	MKRN4P	Q13434	485 aa	Predicted RBP	12.31	□□□□□ -0.44
VPS36-205	ENST00000492650	SPDYE2B	A6NHP3	402 aa		12.23	□□□□□ -0.45
VPS36-205	ENST00000492650	SPDYE6	P0CI01	402 aa		12.23	□□□□□ -0.45
VPS36-205	ENST00000492650	SPDYE2	Q495Y8	402 aa		12.23	□□□□□ -0.45
VPS36-205	ENST00000492650	REM2	Q8IYK8	340 aa	Predicted RBP	12.2	□□□□□ -0.46
VPS36-205	ENST00000492650	CHRDL2	Q6WN34	429 aa		12.18	□□□□□ -0.46
VPS36-205	ENST00000492650	ZNF692	Q9BU19	519 aa	Predicted RBP	12.17	□□□□□ -0.46
VPS36-205	ENST00000492650	PITPNM1	O00562	1244 aa		12.06	□□□□□ -0.48
VPS36-205	ENST00000492650	SSUH2	Q9Y2M2	353 aa		12.06	□□□□□ -0.48
VPS36-205	ENST00000492650	CLEC11A	Q9Y240	323 aa		11.99	□□□□□ -0.49
VPS36-205	ENST00000492650	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.98	□□□□□ -0.49
VPS36-205	ENST00000492650	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.97	□□□□□ -0.49
VPS36-205	ENST00000492650	PIP4P2	Q8N4L2	257 aa		11.93	□□□□□ -0.5
VPS36-205	ENST00000492650	SPDYE4	A6NLX3	237 aa		11.9	□□□□□ -0.5
VPS36-205	ENST00000492650	FXR2	P51116	673 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
VPS36-205	ENST00000492650	PRR29	P0C7W0	189 aa		11.81	□□□□□ -0.52
VPS36-205	ENST00000492650	PRKAR2A	P13861	404 aa	Known RBP	11.78	□□□□□ -0.52
VPS36-205	ENST00000492650	HAX1	O00165	279 aa		11.71	□□□□□ -0.53
VPS36-205	ENST00000492650	CHADL	Q6NUI6	762 aa		11.71	□□□□□ -0.53
VPS36-205	ENST00000492650	STAG3	Q9UJ98	1225 aa		11.71	□□□□□ -0.53
VPS36-205	ENST00000492650	FKBP8	Q14318	412 aa		11.57	□□□□□ -0.56
VPS36-205	ENST00000492650	PROM2	Q8N271	834 aa		11.57	□□□□□ -0.56
VPS36-205	ENST00000492650	SP7	Q8TDD2	431 aa	Predicted RBP	11.57	□□□□□ -0.56
VPS36-205	ENST00000492650	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.54	□□□□□ -0.56
VPS36-205	ENST00000492650	EVX2	Q03828	476 aa		11.53	□□□□□ -0.56
VPS36-205	ENST00000492650	CREBZF	Q9NS37	354 aa		11.52	□□□□□ -0.57
VPS36-205	ENST00000492650	C19orf67	A6NJJ6	358 aa		11.5	□□□□□ -0.57
VPS36-205	ENST00000492650	CD44	P16070	742 aa	Known RBP	11.42	□□□□□ -0.58
VPS36-205	ENST00000492650	NPM1	P06748	294 aa	Known RBP eCLIP	11.37	□□□□□ -0.59
VPS36-205	ENST00000492650	MIER1	Q8N108	512 aa		11.37	□□□□□ -0.59
VPS36-205	ENST00000492650	PLEKHG5	O94827	1062 aa		11.35	□□□□□ -0.59
VPS36-205	ENST00000492650	MNX1	P50219	401 aa	Predicted RBP	11.33	□□□□□ -0.6
VPS36-205	ENST00000492650	PLCD3	Q8N3E9	789 aa		11.31	□□□□□ -0.6
VPS36-205	ENST00000492650	ZRANB1	Q9UGI0	708 aa		11.31	□□□□□ -0.6
VPS36-205	ENST00000492650	GABBR2	O75899	941 aa		11.29	□□□□□ -0.6
VPS36-205	ENST00000492650	PAK3	O75914	559 aa	Predicted RBP	11.29	□□□□□ -0.6
VPS36-205	ENST00000492650	FBXO3	Q9UK99	471 aa		11.26	□□□□□ -0.61
VPS36-205	ENST00000492650	ZNF579	Q8NAF0	562 aa	Known RBP	11.22	□□□□□ -0.61
VPS36-205	ENST00000492650	CLCN6	P51797	869 aa		11.19	□□□□□ -0.62
VPS36-205	ENST00000492650	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.19	□□□□□ -0.62
VPS36-205	ENST00000492650	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.18	□□□□□ -0.62
VPS36-205	ENST00000492650	PHF12	Q96QT6	1004 aa		11.15	□□□□□ -0.62
VPS36-205	ENST00000492650	RASEF	Q8IZ41	740 aa		11.1	□□□□□ -0.63
VPS36-205	ENST00000492650	VASP	P50552	380 aa	Predicted RBP	11.09	□□□□□ -0.63
VPS36-205	ENST00000492650	DCBLD2	Q96PD2	775 aa		11.09	□□□□□ -0.63
VPS36-205	ENST00000492650	GALR2	O43603	387 aa	Predicted RBP	11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms