RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 SDR42E2A6NKP2 422 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 KIF1CO43896 1103 aaKnown RBP14.16□□□□□ -0.14
SEC13-208ENST00000397109 NDUFS3O75489 264 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 VAPBO95292 243 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 ITGA8P53708 1063 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 FOXM1Q08050 763 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 BOP1Q14137 746 aaKnown RBP14.16□□□□□ -0.14
SEC13-208ENST00000397109 SEMA3AQ14563 771 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 TERF2Q15554 542 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 MRNIPQ6NTE8 343 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 CASC4Q6P4E1 433 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 IL22RA1Q8N6P7 574 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 ZSCAN1Q8NBB4 408 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 SIDT2Q8NBJ9 832 aaKnown RBP14.16□□□□□ -0.14
SEC13-208ENST00000397109 OR4E2Q8NGC2 313 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 ASZ1Q8WWH4 475 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 NKD1Q969G9 470 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 MFSD3Q96ES6 412 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 SLC41A2Q96JW4 573 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 TCF12Q99081 682 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 MAP3K3Q99759 626 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 CTRCQ99895 268 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 TMEM109Q9BVC6 243 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 MARCH4Q9P2E8 410 aaPredicted RBP14.16□□□□□ -0.14
SEC13-208ENST00000397109 POLG2Q9UHN1 485 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 ADAM21Q9UKJ8 722 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 PLAAQ9Y263 795 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 NFS1Q9Y697 457 aa14.16□□□□□ -0.14
SEC13-208ENST00000397109 IGHV5-51A0A0C4DH38 117 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 HMGB1P1B2RPK0 211 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 KPNA5O15131 536 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 KDM1AO60341 852 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 RAD1O60671 282 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 MAP4P27816 1152 aaKnown RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 ACADLP28330 430 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 ARL4DP49703 201 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 RNF187Q5TA31 235 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 PTRHD1Q6GMV3 140 aaKnown RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 KIAA0930Q6ICG6 404 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 BPHLQ86WA6 291 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 TBC1D21Q8IYX1 336 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 CACNA2D3Q8IZS8 1091 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 NLGN4XQ8N0W4 816 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 OTUD6BQ8N6M0 293 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 LSM14AQ8ND56 463 aaKnown RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 PHC3Q8NDX5 983 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 NLGN4YQ8NFZ3 816 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 UBLCP1Q8WVY7 318 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 PANX3Q96QZ0 392 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 OR6C1Q96RD1 312 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 ROPN1BQ9BZX4 212 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 SPRY4Q9C004 299 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 ROPN1Q9HAT0 212 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 APMAPQ9HDC9 416 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 PDE7BQ9NP56 450 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 GNPTGQ9UJJ9 305 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 PILRAQ9UKJ1 303 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 ASF1AQ9Y294 204 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 TMEM184BQ9Y519 407 aaPredicted RBP14.15□□□□□ -0.14
SEC13-208ENST00000397109 IGSF10Q6WRI0 2623 aa14.15□□□□□ -0.14
SEC13-208ENST00000397109 FAM237BA0A1B0GVD1 139 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 EFSO43281 561 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 AVILO75366 819 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 STK17BO94768 372 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 ZBTB11O95625 1053 aaPredicted RBP14.14□□□□□ -0.15
SEC13-208ENST00000397109 APOA4P06727 396 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 MYZAPP0CAP1 466 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 POLR2CP19387 275 aaPredicted RBP14.14□□□□□ -0.15
SEC13-208ENST00000397109 RPS3P23396 243 aaKnown RBP eCLIP14.14□□□□□ -0.153e-8■■■□□ 19.1
SEC13-208ENST00000397109 CCR7P32248 378 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 PPP1CAP62136 330 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 SH3BP2P78314 561 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 ACY1Q03154 408 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 MAP7Q14244 749 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 TMED2Q15363 201 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 UAP1Q16222 522 aaPredicted RBP14.14□□□□□ -0.15
SEC13-208ENST00000397109 DNAJC21Q5F1R6 531 aaKnown RBP14.14□□□□□ -0.15
SEC13-208ENST00000397109 AGBL2Q5U5Z8 902 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 CES3Q6UWW8 571 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 LDB1Q86U70 411 aaPredicted RBP14.14□□□□□ -0.15
SEC13-208ENST00000397109 AMIGO1Q86WK6 493 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 OR52E1Q8NGJ3 308 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 FCRL4Q96PJ5 515 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 HGH1Q9BTY7 390 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 EFHD1Q9BUP0 239 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 C1GALT1Q9NS00 363 aa14.14□□□□□ -0.15
SEC13-208ENST00000397109 E7ESA3 106 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 H3BMM5 538 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 ERVH48-1M5A8F1 160 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 POLR3GO15318 223 aaPredicted RBP14.13□□□□□ -0.15
SEC13-208ENST00000397109 GPC4O75487 556 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 RPN2P04844 631 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 FGF5P12034 268 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 ITGB6P18564 788 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 ARNTP27540 789 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 SHMT2P34897 504 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 KPNA2P52292 529 aaKnown RBP14.13□□□□□ -0.15
SEC13-208ENST00000397109 HSD11B2P80365 405 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 ABHD18Q0P651 414 aa14.13□□□□□ -0.15
SEC13-208ENST00000397109 HSPA14Q0VDF9 509 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms