RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CDYLQ9Y232 598 aa21■□□□□ 0.95
CCDC28B-201ENST00000373602 TDRKHQ9Y2W6 561 aaKnown RBP21■□□□□ 0.95
CCDC28B-201ENST00000373602 IQCF5A8MTL0 148 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 ZIC2O95409 532 aaPredicted RBP20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 KLK3P07288 261 aaPredicted RBP20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 CHRM5P08912 532 aaPredicted RBP20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 UGT2B7P16662 529 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 NMBRP28336 390 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 PTPN4P29074 926 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 RORAP35398 523 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 RPS15P62841 145 aaKnown RBP20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 HSPA14Q0VDF9 509 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 CDHR3Q6ZTQ4 885 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 TMEM135Q86UB9 458 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 HOOK3Q86VS8 718 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 VRK3Q8IV63 474 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 DSELQ8IZU8 1212 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 MPP5Q8N3R9 675 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 FLVCR1-AS1Q8TAF5 88 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 SEC14L1Q92503 715 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 ABHD17AQ96GS6 310 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 KIFC1Q9BW19 673 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 MRM3Q9HC36 420 aaKnown RBP20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 SPHK1Q9NYA1 384 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 SERTAD3Q9UJW9 196 aa20.99■□□□□ 0.95
CCDC28B-201ENST00000373602 SPTBP11277 2137 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 TCRBV7S3A2A0A539 114 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 PYCARD-AS1I3L0S3 204 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 MEN1O00255 615 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 KDM1AO60341 852 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 MGAT1P26572 445 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 AOAHP28039 575 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 IZUMO3Q5VZ72 239 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 TRIM73Q86UV7 250 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 PTRH1Q86Y79 214 aaKnown RBP20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 RASGEF1CQ8N431 466 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 C19orf47Q8N9M1 422 aaKnown RBP20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 CHRNA10Q9GZZ6 450 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 P2RY12Q9H244 342 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 CHST8Q9H2A9 424 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 ACTR5Q9H9F9 607 aaPredicted RBP20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 SYBUQ9NX95 663 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 PLAGL1Q9UM63 463 aa20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 FARSAQ9Y285 508 aaKnown RBP20.98■□□□□ 0.95
CCDC28B-201ENST00000373602 SLCO2B1O94956 709 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 APOA4P06727 396 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 CYP2A7P20853 494 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 RPS3P23396 243 aaKnown RBP eCLIP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 ARNTP27540 789 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 MAGEA6P43360 314 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 ITGA1P56199 1179 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 RPS18P62269 152 aaKnown RBP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 TRIP13Q15645 432 aaPredicted RBP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 KYNUQ16719 465 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 UGT8Q16880 541 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 KCTD19Q17RG1 926 aaPredicted RBP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 LCN10Q6JVE6 187 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 SYVN1Q86TM6 617 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 KRT222Q8N1A0 295 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 CLIP3Q96DZ5 547 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 MFSD3Q96ES6 412 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 TCTN2Q96GX1 697 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 FAM60AQ9NP50 221 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 ZNF71Q9NQZ8 489 aaPredicted RBP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 PCMTD2Q9NV79 361 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 TTC7AQ9ULT0 858 aaPredicted RBP20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 JRKLQ9Y4A0 524 aa20.97■□□□□ 0.95
CCDC28B-201ENST00000373602 A0A0J9YY10 115 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 E7EQ34 232 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 WISP1O95388 367 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 RAB40ALP0C0E4 278 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 PKLRP30613 574 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 PMS2P54278 862 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 KCNJ11Q14654 390 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 KIR2DS3Q14952 304 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 TMED2Q15363 201 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 ZIC1Q15915 447 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 PTRHD1Q6GMV3 140 aaKnown RBP20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 UNC5DQ6UXZ4 953 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 LRRC6Q86X45 466 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 PBKQ96KB5 322 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 PANX3Q96QZ0 392 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 MENTQ9BUN1 341 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 GNPTGQ9UJJ9 305 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 SOX13Q9UN79 622 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 MAN2B2Q9Y2E5 1009 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 BSNQ9UPA5 3926 aa20.96■□□□□ 0.95
CCDC28B-201ENST00000373602 ISM1B1AKI9 464 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 NDUFS3O75489 264 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 VAPBO95292 243 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 RPN2P04844 631 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 PEBP1P30086 187 aaKnown RBP20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 GABRA4P48169 554 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 VPS41P49754 854 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 RAB28P51157 221 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 GPS1Q13098 491 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 GRB7Q14451 532 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 SLC5A12Q1EHB4 618 aa20.95■□□□□ 0.94
CCDC28B-201ENST00000373602 LACTB2Q53H82 288 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms