RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Rnh1Q91VI7 456 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Ift27Q9D0P8 186 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Hacd2Q9D3B1 254 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Syt5Q9R0N5 386 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Serpina3jD3Z451 420 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Psmb10O35955 273 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Lrig1P70193 1091 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Gm11487Q5RIS0 354 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Tatdn1Q6P8M1 295 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Plekha6Q7TQG1 1173 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Adnp2Q8CHC8 1165 aaKnown RBP15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Gprc6aQ8K4Z6 928 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 B4galt3Q91YY2 395 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 CasrQ9QY96 1079 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Gpc6Q9R087 555 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Nfs1Q9Z1J3 459 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Rpl3P27659 403 aaKnown RBP15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Fscn2Q32M02 492 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Hk3Q3TRM8 922 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Lingo3Q6GQU6 589 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 BC061212Q6P8K3 481 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Catsper4Q8BVN3 442 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Hist1h2aaQ8CGP4 129 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Armc1Q9D7A8 282 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Pop5Q9DB28 169 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Il20Q9JKV9 176 aa15.28■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Mllt3A2AM29 569 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Hipk1O88904 1210 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Npy2rP97295 381 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Lix1Q6P566 282 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Txndc15Q6P6J9 344 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Gk5Q8BX05 534 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Tprg1Q8CB49 279 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Slc29a4Q8R139 528 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Hkdc1Q91W97 915 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Atg13Q91YI1 516 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Agpat5Q9D1E8 365 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Nup188Q6ZQH8 1759 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Zfp563B8JJZ9 448 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Mtnd3P03899 115 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 P06324 132 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Klrb1aP27811 227 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Fbp2P70695 339 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Ap5b1Q3TAP4 876 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Eri2Q5BKS4 688 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 N4bp1Q6A037 893 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Scn4bQ7M729 228 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 MaelQ8BVN9 434 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Rbm4Q8C7Q4 361 aaKnown RBP15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Rbm4bQ8VE92 357 aaKnown RBP15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Sult5a1Q91X36 291 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Ovca2Q9D7E3 225 aa15.27■□□□□ 0.04
Ccdc88b-201ENSMUST00000113440 Gm4924A0A1B0GR71 966 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 H2-Q1O19441 368 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 HcrtO55241 130 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 SqleP52019 572 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Htr1aQ64264 421 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Olfr570Q8VH12 312 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 CrebzfQ91ZR3 358 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Klhl35Q9CZ49 574 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Spock2Q9ER58 423 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Il18rapQ9Z2B1 614 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Fbxo47A2A6H3 451 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Eif2b3B1AUN2 452 aaKnown RBP15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 GzmkO35205 263 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Cct3P80318 545 aaKnown RBP15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Lrrc58Q3UGP9 366 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 PtprrQ62132 656 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Lcn3Q62471 182 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Lemd2Q6DVA0 511 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Cyp2d40Q6P8N9 338 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Prpf38bQ80SY5 542 aaKnown RBP15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 4933402J07RikQ8BHX0 270 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Aph1bQ8C7N7 257 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 RhdQ8CF94 418 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Fbxl8Q8CIG9 374 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Acap1Q8K2H4 740 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Igsf8Q8R366 611 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Erp27Q9D8U3 272 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Gfra4Q9JJT2 260 aa15.27■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 H2-EaP01904 255 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 P04224 255 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Bpifa6Q0VGU8 367 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Lrrn4clQ3TYX2 239 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Upf3aQ3ULJ3 422 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Esrp1Q3US41 680 aaKnown RBP15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Slc25a23Q6GQS1 467 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Parp12Q8BZ20 711 aaKnown RBP15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Eif3mQ99JX4 374 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Exo5Q9CXP9 373 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Acbd7Q9D258 88 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Ssr3Q9DCF9 185 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Xlr5aA2BI45 236 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Gm6685D3YYP3 228 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Gm5799E9Q2M1 201 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Vmn2r54K7N649 806 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Mkln1O89050 735 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 GaltQ03249 379 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Kbtbd8Q3UQV5 599 aa15.26■□□□□ 0.03
Ccdc88b-201ENSMUST00000113440 Olfr463Q5SW49 311 aa15.26■□□□□ 0.03
Retrieved 100 of 22,080 RNA–protein pairs in 23.6 ms