RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DEFB109BQ30KR1 87 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 FBXO38Q6PIJ6 1188 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 ZNF534Q76KX8 674 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 TBC1D21Q8IYX1 336 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 PPM1MQ96MI6 270 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 SLC25A18Q9H1K4 315 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 CHRAC1Q9NRG0 131 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 STARD5Q9NSY2 213 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 CATSPERZQ9NTU4 200 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 TUBD1Q9UJT1 453 aa16.35■□□□□ 0.21
CLK3-210ENST00000563112 SLC5A10A0PJK1 596 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 C21orf140B9A014 251 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 J3QKU1 62 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 SLC28A2O43868 658 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 CPNE3O75131 537 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 ITGB6P18564 788 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 F8A1P23610 371 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 ACADLP28330 430 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 OAS2P29728 719 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 SHMT2P34897 504 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 TTPAP49638 278 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 SARNPP82979 210 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 CDK16Q00536 496 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 KCNAB2Q13303 367 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 DNASE1L3Q13609 305 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 OR5AR1Q8NGP9 310 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 CT55Q8WUE5 264 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 APOBEC4Q8WW27 367 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 ZNF501Q96CX3 271 aaPredicted RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 CARD6Q9BX69 1037 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 XKR8Q9H6D3 395 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 LATS2Q9NRM7 1088 aa16.34■□□□□ 0.21
CLK3-210ENST00000563112 TDRKHQ9Y2W6 561 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 MRPS18BQ9Y676 258 aaKnown RBP16.34■□□□□ 0.21
CLK3-210ENST00000563112 PIPSLA2A3N6 862 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 CD3EAPO15446 510 aaKnown RBP16.33■□□□□ 0.2
CLK3-210ENST00000563112 RECKO95980 971 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 APOA4P06727 396 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 KLK3P07288 261 aaPredicted RBP16.33■□□□□ 0.2
CLK3-210ENST00000563112 TPSB2P20231 275 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 CSE1LP55060 971 aaKnown RBP16.33■□□□□ 0.2
CLK3-210ENST00000563112 RPS15P62841 145 aaKnown RBP16.33■□□□□ 0.2
CLK3-210ENST00000563112 ERV3-1Q14264 604 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 TPSAB1Q15661 275 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 DNAJC21Q5F1R6 531 aaKnown RBP16.33■□□□□ 0.2
CLK3-210ENST00000563112 NAPRTQ6XQN6 538 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 PRICKLE2Q7Z3G6 844 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 ADGRF3Q8IZF5 1079 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 OR5K2Q8NHB8 316 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 ASZ1Q8WWH4 475 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 SEC14L1Q92503 715 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 CPT1BQ92523 772 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 PBKQ96KB5 322 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 GPR87Q9BY21 358 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 PITPNM3Q9BZ71 974 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 ACTR10Q9NZ32 417 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 SERTAD3Q9UJW9 196 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 ICKQ9UPZ9 632 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 JRKLQ9Y4A0 524 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 PCDHGA6Q9Y5G7 932 aa16.33■□□□□ 0.2
CLK3-210ENST00000563112 BHMG1C9JSJ3 638 aaPredicted RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 PRMT5O14744 637 aaPredicted RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 TERTO14746 1132 aaKnown RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 NDUFS3O75489 264 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 CREG1O75629 220 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 RPN2P04844 631 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 ST6GAL1P15907 406 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 CRADDP78560 199 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 HSPA14Q0VDF9 509 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 SEMA3AQ14563 771 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 TMED2Q15363 201 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 PTRHD1Q6GMV3 140 aaKnown RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 LRRC8BQ6P9F7 803 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 UNC5AQ6ZN44 842 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 SDCCAG8Q86SQ7 713 aaPredicted RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 MPP5Q8N3R9 675 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 OTUD6BQ8N6M0 293 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 PRELID2Q8N945 189 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 GSDMBQ8TAX9 411 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 N4BP2L2Q92802 583 aaPredicted RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 MR1Q95460 341 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 TRAPPC9Q96Q05 1148 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 PANX3Q96QZ0 392 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 NAP1L3Q99457 506 aaPredicted RBP16.32■□□□□ 0.2
CLK3-210ENST00000563112 AP1M1Q9BXS5 423 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 SLC7A5P2Q9GIP4 190 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 TWSG1Q9GZX9 223 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 OR6C2Q9NZP2 312 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 POLHQ9Y253 713 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 BOD1L1Q8NFC6 3051 aa16.32■□□□□ 0.2
CLK3-210ENST00000563112 CDC14CA4D256 554 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 TMEM150CB9EJG8 249 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 PFDN6O15212 129 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 MSL3P1P0C860 447 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 CYP2A7P20853 494 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 MGAT1P26572 445 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 CCR7P32248 378 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 TRIP13Q15645 432 aaPredicted RBP16.31■□□□□ 0.2
CLK3-210ENST00000563112 ATP1A1-AS1Q5TC04 95 aa16.31■□□□□ 0.2
CLK3-210ENST00000563112 SPESP1Q6UW49 350 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms