RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, human

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC4-216	ENST00000544989	TRMT1	Q9NXH9	659 aa	Known RBP	11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	SIDT1	Q9NXL6	827 aa	Known RBP	11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	SLC2A6	Q9UGQ3	507 aa		11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	GNPTG	Q9UJJ9	305 aa		11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	SOX13	Q9UN79	622 aa		11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	MRFAP1	Q9Y605	127 aa		11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	UNC79	Q9P2D8	2635 aa		11.51	□□□□□ -0.57
HDAC4-216	ENST00000544989	PTPN13	Q12923	2485 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	PIKFYVE	Q9Y2I7	2098 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	OR51F1	A6NGY5	319 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	SDR42E2	A6NKP2	422 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989		H3BMM5	538 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	NDUFS3	O75489	264 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	ZBTB11	O95625	1053 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	MT-ND3	P03897	115 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	APOA4	P06727	396 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	PRSS56	P0CW18	603 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	RPS3	P23396	243 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	MGAT1	P26572	445 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	LEPR	P48357	1165 aa	Known RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	HSD11B2	P80365	405 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	FOXM1	Q08050	763 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	BOP1	Q14137	746 aa	Known RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	TRIP13	Q15645	432 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	DNAJC21	Q5F1R6	531 aa	Known RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	ANKS6	Q68DC2	871 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	FAM92B	Q6ZTR7	304 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	ZNF534	Q76KX8	674 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	PCGF5	Q86SE9	256 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	TBC1D21	Q8IYX1	336 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	CACNA2D3	Q8IZS8	1091 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	NLGN4X	Q8N0W4	816 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	ESX1	Q8N693	406 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	SIDT2	Q8NBJ9	832 aa	Known RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	GABPB2	Q8TAK5	448 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	GSDMB	Q8TAX9	411 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	COG1	Q8WTW3	980 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	KIAA1143	Q96AT1	154 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	SLC41A2	Q96JW4	573 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	ZNF778	Q96MU6	729 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	CPNE5	Q9HCH3	593 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	SYTL2	Q9HCH5	934 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	WDR70	Q9NW82	654 aa		11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	TMEM184B	Q9Y519	407 aa	Predicted RBP	11.5	□□□□□ -0.57
HDAC4-216	ENST00000544989	FAM237B	A0A1B0GVD1	139 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SLC5A10	A0PJK1	596 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	OR6C74	A6NCV1	312 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ATXN7	O15265	892 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	RAD1	O60671	282 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ITGB2	P05107	769 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	FGF5	P12034	268 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SHMT2	P34897	504 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	VPS41	P49754	854 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SEPHS1	P49903	392 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ADAR	P55265	1226 aa	Known RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ABHD18	Q0P651	414 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PPP1R7	Q15435	360 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PTRHD1	Q6GMV3	140 aa	Known RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	TTC27	Q6P3X3	843 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	CASC4	Q6P4E1	433 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	AMIGO1	Q86WK6	493 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PPP1R3B	Q86XI6	285 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	LMNTD2	Q8IXW0	634 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PPIL6	Q8IXY8	311 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	LILRA3	Q8N6C8	439 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	OTUD6B	Q8N6M0	293 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	OR4E2	Q8NGC2	313 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	CPT1B	Q92523	772 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SLCO2A1	Q92959	643 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	NKD1	Q969G9	470 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	CRELD1	Q96HD1	420 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ULBP3	Q9BZM4	244 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	FANCE	Q9HB96	536 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	C1GALT1	Q9NS00	363 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	SYBU	Q9NX95	663 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	RNF14	Q9UBS8	474 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PILRA	Q9UKJ1	303 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	RARRES3	Q9UL19	164 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	ASF1A	Q9Y294	204 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	PRSS21	Q9Y6M0	314 aa		11.49	□□□□□ -0.57
HDAC4-216	ENST00000544989	CTAGE9	A4FU28	777 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	C2orf74	A8MZ97	194 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	SMAP	O00193	183 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	NDC80	O14777	642 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	EFS	O43281	561 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	KIF1C	O43896	1103 aa	Known RBP	11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	OR1I1	O60431	355 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	STK17B	O94768	372 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	VAPB	O95292	243 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	OGN	P20774	298 aa	Known RBP	11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	ACADL	P28330	430 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	NMBR	P28336	390 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	PDHA2	P29803	388 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	PREP	P48147	710 aa		11.48	□□□□□ -0.57
HDAC4-216	ENST00000544989	GNG11	P61952	73 aa		11.48	□□□□□ -0.57

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