RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ANTXRLA6NF34 631 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TSPY2A6NKD2 308 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 DUXAA6NLW8 204 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TMEM189-UBE2V1I3L0A0 370 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 NTN3O00634 580 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 SH2B2O14492 632 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 PLOD3O60568 738 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TBCAO75347 108 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 ENTPD3O75355 529 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 GJB3O75712 270 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 BCL10O95999 233 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 LDLRP01130 860 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 IGLV1-44P01699 117 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TSPY3P0CV98 308 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TSPY8P0CW00 308 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 IGHV4-38-2P0DP08 117 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 MYBL1P10243 752 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 MSH3P20585 1137 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 EEF1B2P24534 225 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 HRH2P25021 359 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ACADLP28330 430 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ALDH4A1P30038 563 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 CSE1LP55060 971 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 SIRPAP78324 504 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TSPY1Q01534 308 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 RUNX1T1Q06455 604 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 MFAP5Q13361 173 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 UBE2V1Q13404 147 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ITGA9Q13797 1035 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 BECN1Q14457 450 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TAF13Q15543 124 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ZC2HC1CQ53FD0 456 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 FAM133BQ5BKY9 247 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 GARNL3Q5VVW2 1013 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ZNF790Q6PG37 636 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 SH2D5Q6ZV89 423 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ISCA2Q86U28 154 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TMEM173Q86WV6 379 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 TICAM2Q86XR7 235 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 FBXO39Q8N4B4 442 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 MINDY1Q8N5J2 469 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 KCTD6Q8NC69 237 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 CCDC191Q8NCU4 936 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 RBM15BQ8NDT2 890 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 WDR20Q8TBZ3 569 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 SLC22A18Q96BI1 424 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 NSL1Q96IY1 281 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 GBP5Q96PP8 586 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 CDRT15Q96T59 188 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 SEPHS2Q99611 448 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 BAG1Q99933 345 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 FNDC11Q9BVV2 318 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 OLFML3Q9NRN5 406 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 MIOSQ9NXC5 875 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 TRMT1Q9NXH9 659 aaKnown RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 DPP3Q9NY33 737 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 COQ3Q9NZJ6 369 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 DNAJB4Q9UDY4 337 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 SLC24A2Q9UI40 661 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ACAD8Q9UKU7 415 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 ZHX1Q9UKY1 873 aaPredicted RBP2.59□□□□□ -1.99
CD44-238ENST00000534296 PLAGL1Q9UM63 463 aa2.59□□□□□ -1.99
CD44-238ENST00000534296 OR2A25A4D2G3 310 aa2.58□□□□□ -2
CD44-238ENST00000534296 TMEM8BA6NDV4 472 aa2.58□□□□□ -2
CD44-238ENST00000534296 SLCO1B7G3V0H7 640 aa2.58□□□□□ -2
CD44-238ENST00000534296 J3QR06 171 aa2.58□□□□□ -2
CD44-238ENST00000534296 PLPP2O43688 288 aa2.58□□□□□ -2
CD44-238ENST00000534296 SSX4O60224 188 aa2.58□□□□□ -2
CD44-238ENST00000534296 DKC1O60832 514 aaKnown RBP eCLIP2.58□□□□□ -2
CD44-238ENST00000534296 ZNF217O75362 1048 aa2.58□□□□□ -2
CD44-238ENST00000534296 ERAL1O75616 437 aaKnown RBP2.58□□□□□ -2
CD44-238ENST00000534296 CSPG5O95196 566 aa2.58□□□□□ -2
CD44-238ENST00000534296 PGM3O95394 542 aa2.58□□□□□ -2
CD44-238ENST00000534296 DNTTP04053 509 aa2.58□□□□□ -2
CD44-238ENST00000534296 PATE4P0C8F1 98 aa2.58□□□□□ -2
CD44-238ENST00000534296 PRSS56P0CW18 603 aa2.58□□□□□ -2
CD44-238ENST00000534296 NR2F1P10589 423 aa2.58□□□□□ -2
CD44-238ENST00000534296 CKMT2P17540 419 aa2.58□□□□□ -2
CD44-238ENST00000534296 ERCC2P18074 760 aa2.58□□□□□ -2
CD44-238ENST00000534296 ITGA3P26006 1051 aa2.58□□□□□ -2
CD44-238ENST00000534296 NMBRP28336 390 aa2.58□□□□□ -2
CD44-238ENST00000534296 MMP15P51511 669 aa2.58□□□□□ -2
CD44-238ENST00000534296 IFI35P80217 286 aaPredicted RBP2.58□□□□□ -2
CD44-238ENST00000534296 HSPB3Q12988 150 aa2.58□□□□□ -2
CD44-238ENST00000534296 BAATQ14032 418 aaPredicted RBP2.58□□□□□ -2
CD44-238ENST00000534296 NR1D2Q14995 579 aa2.58□□□□□ -2
CD44-238ENST00000534296 PCLAFQ15004 111 aa2.58□□□□□ -2
CD44-238ENST00000534296 DLG2Q15700 870 aa2.58□□□□□ -2
CD44-238ENST00000534296 TMEM198Q66K66 360 aa2.58□□□□□ -2
CD44-238ENST00000534296 KLC3Q6P597 504 aa2.58□□□□□ -2
CD44-238ENST00000534296 C15orf39Q6ZRI6 1047 aa2.58□□□□□ -2
CD44-238ENST00000534296 ADGRA1Q86SQ6 560 aa2.58□□□□□ -2
CD44-238ENST00000534296 GALNT13Q8IUC8 556 aa2.58□□□□□ -2
CD44-238ENST00000534296 MFN1Q8IWA4 741 aa2.58□□□□□ -2
CD44-238ENST00000534296 GUF1Q8N442 669 aaKnown RBP2.58□□□□□ -2
CD44-238ENST00000534296 LSMEM1Q8N8F7 131 aa2.58□□□□□ -2
CD44-238ENST00000534296 TBC1D16Q8TBP0 767 aa2.58□□□□□ -2
CD44-238ENST00000534296 SEMA4DQ92854 862 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms