RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RBM15BQ8NDT2 890 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 C2orf15Q8WU43 125 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 MTBPQ96DY7 904 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TSPAN17Q96FV3 270 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CCDC114Q96M63 670 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KLHL32Q96NJ5 620 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PSKH2Q96QS6 385 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CYTH2Q99418 400 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TMEM79Q9BSE2 394 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 GATA5Q9BWX5 397 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 RBM38Q9H0Z9 239 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 XAB2Q9HCS7 855 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 CD320Q9NPF0 282 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KLC4Q9NSK0 619 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC7A8Q9UHI5 535 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 EXO1Q9UQ84 846 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 ASB3Q9Y575 518 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRSS21Q9Y6M0 314 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRSS51A0A1B0GVH4 220 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 WASH3PC4AMC7 463 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ACOX3O15254 700 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MAGEC1O60732 1142 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TBX10O75333 385 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRSS23O95084 383 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MLYCDO95822 493 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 AMY1AP04745 511 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 C2P06681 752 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SERPINA6P08185 405 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 FGF4P08620 206 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZFXP17010 805 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 SYN1P17600 705 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 RPL17P18621 184 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 LHCGRP22888 699 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 YY1P25490 414 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CNTFP26441 200 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 STX2P32856 288 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CSNK1DP48730 415 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 POLD2P49005 469 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRKAA2P54646 552 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CSE1LP55060 971 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 MTTPP55157 894 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC8A3P57103 927 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TAF10Q12962 218 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TARDBPQ13148 414 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZNF77Q15935 545 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KLHL38Q2WGJ6 581 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PARP15Q460N3 678 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TRIM60Q495X7 471 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PPM1LQ5SGD2 360 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ZNF678Q5SXM1 525 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 N4BP2L1Q5TBK1 243 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 CHST9Q7L1S5 443 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CXXC5Q7LFL8 322 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 CHST15Q7LFX5 561 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 NLRP9Q7RTR0 991 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ADGRG6Q86SQ4 1221 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 APCDD1Q8J025 514 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CD200R1Q8TD46 325 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DTX3LQ8TDB6 740 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PYROXD1Q8WU10 500 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 HEXDCQ8WVB3 486 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 GAB3Q8WWW8 586 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CLPTM1LQ96KA5 538 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VAT1Q99536 393 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TBL1YQ9BQ87 522 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SEZ6LQ9BYH1 1024 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ECT2Q9H8V3 914 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 MSL2Q9HCI7 577 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SLC6A13Q9NSD5 602 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 DDIT4Q9NX09 232 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VSX1Q9NZR4 365 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 RSPH14Q9UHP6 348 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 VANGL2Q9ULK5 521 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PNMA8BQ9ULN7 279 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 COA3Q9Y2R0 106 aaPredicted RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 L3MBTL1Q9Y468 752 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ARL5AQ9Y689 179 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 OR6C75A6NL08 312 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 A8MT66 165 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 HIDE1A8MVS5 230 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 PRR5-ARHGAP8B1AHC4 643 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NT5C1B-RDH14C9J2C7 533 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 F5H423 210 aaPredicted RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 NDUFAB1O14561 156 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 YY2O15391 372 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 SCN2BO60939 215 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 UBXN7O94888 489 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 KLHL2O95198 593 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 LATS1O95835 1130 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 GLP2RO95838 553 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 EPOP01588 193 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 SNRPAP09012 282 aaKnown RBP2.28□□□□□ -2.04
VPS54-202ENST00000354504 CCL5P13501 91 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 TPH1P17752 444 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 CD22P20273 847 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MAPKAPK2P49137 400 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 NPY2RP49146 381 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 MAP2K6P52564 334 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 METAP1P53582 386 aa2.28□□□□□ -2.04
VPS54-202ENST00000354504 ITGA1P56199 1179 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms