RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 OR1I1O60431 355 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TULP3O75386 442 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CREB1P16220 341 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 DGKZQ13574 1117 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 WSCD2Q2TBF2 565 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 REP15Q6BDI9 236 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 VANGL1Q8TAA9 524 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PFDN5Q99471 154 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 EQTNQ9NQ60 294 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 XPNPEP1Q9NQW7 623 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 SMPD4Q9NXE4 827 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TRAF6Q9Y4K3 522 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 IPO13O94829 963 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 YES1P07947 543 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 PRKD1Q15139 912 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TREML2Q5T2D2 321 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TCEAL6Q6IPX3 200 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 BEND5Q7L4P6 421 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF563Q8TA94 476 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 SOCS4Q8WXH5 440 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 BORCS6Q96GS4 357 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 NEUROD4Q9HD90 331 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 SNTG1Q9NSN8 517 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 RAB23Q9ULC3 237 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 NCKAP1Q9Y2A7 1128 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FXYD6-FXYD2A0A087WZ82 144 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 DCLK1O15075 740 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 S100A10P60903 97 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TSPAN5P62079 268 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 NAE1Q13564 534 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 STOML3Q8TAV4 291 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FEM1AQ9BSK4 669 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FXYD6Q9H0Q3 95 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 THG1LQ9NWX6 298 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ATP6AP2A0A1C7CYW4 349 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 ATP6AP2O75787 350 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 TFPIP10646 304 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 STOMP27105 288 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CD40LGP29965 261 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 RPL26P61254 145 aaKnown RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 NRG1Q02297 640 aaPredicted RBP9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FSTL1Q12841 308 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 DLG2Q15700 870 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 COLEC12Q5KU26 742 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FSTL4Q6MZW2 842 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FBXL19Q6PCT2 694 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 CKAP5Q14008 2032 aa9.73□□□□□ -0.85
COL6A3-201ENST00000295550 FMO3P31513 532 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 IDH3AP50213 366 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 PRKCDQ05655 676 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SMARCD3Q6STE5 483 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GPR180Q86V85 440 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 OR2L8Q8NGY9 312 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SNX27Q96L92 541 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 COMMD4Q9H0A8 199 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TOGARAM1Q9Y4F4 1720 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 KIAA1551Q9HCM1 1747 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SLC33A1O00400 549 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 MSL3P1P0C860 447 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TIE1P35590 1138 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SLC25A11Q02978 314 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CBLBQ13191 982 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SYCE2Q6PIF2 218 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 DCLRE1AQ6PJP8 1040 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ROPN1LQ96C74 230 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GAD1Q99259 594 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ISPDA4D126 451 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 H7C2Y5 167 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SCN2BO60939 215 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 RBM34P42696 430 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 MC1RQ01726 317 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ADGRE1Q14246 886 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 DPYSL2Q16555 572 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 CEP76Q8TAP6 659 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GLT1D1Q96MS3 346 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ATG10Q9H0Y0 220 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 HES2Q9Y543 173 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ARL5CA6NH57 179 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 HCN1O60741 890 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 GJB1P08034 283 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 AKR1A1P14550 325 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SPATA19Q7Z5L4 167 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TMC8Q8IU68 726 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 COPS5Q92905 334 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 PHB2Q99623 299 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 ALG2Q9H553 416 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 MAP4K5Q9Y4K4 846 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TSPAN1O60635 241 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TMEM63AO94886 807 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 PTX3P26022 381 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 IGFALSP35858 605 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 RAB15P59190 212 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SEMA5AQ13591 1074 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 TEX44Q53QW1 395 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SMYD5Q6GMV2 418 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 NAT8LQ8N9F0 302 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 AP2M1Q96CW1 435 aa9.72□□□□□ -0.85
COL6A3-201ENST00000295550 MRPL9Q9BYD2 267 aaKnown RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 RPH3AQ9Y2J0 694 aaPredicted RBP9.72□□□□□ -0.85
COL6A3-201ENST00000295550 SMIM35A0A1B0GVV1 85 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms