RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 KDM4CQ9H3R0 1056 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 POLR3HQ9Y535 204 aaPredicted RBP10.34□□□□□ -0.75
VPS11-208ENST00000621676 PATJQ8NI35 1801 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 SCN3AQ9NY46 2000 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 POM121BA6NF01 834 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 ATP1B2P14415 290 aaPredicted RBP10.34□□□□□ -0.75
VPS11-208ENST00000621676 RGS4P49798 205 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 CLCN7P51798 805 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 CCNG1P51959 295 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 SLC20A2Q08357 652 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 PRKAA1Q13131 559 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 IMPG1Q17R60 797 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 RNF43Q68DV7 783 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 UCMAQ8WVF2 138 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 EZH1Q92800 747 aaPredicted RBP10.34□□□□□ -0.75
VPS11-208ENST00000621676 GSTO2Q9H4Y5 243 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 PFDN4Q9NQP4 134 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 SLC23A2Q9UGH3 650 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 USP22Q9UPT9 525 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 COPG1Q9Y678 874 aaKnown RBP10.34□□□□□ -0.75
VPS11-208ENST00000621676 PLXNA3P51805 1871 aa10.34□□□□□ -0.75
VPS11-208ENST00000621676 C5orf67F2Z3F1 127 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 MATN2O00339 956 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 BIRC5O15392 142 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 NME6O75414 186 aaPredicted RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 POP7O75817 140 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 FSBPO95073 299 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PAPSS2O95340 614 aaPredicted RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 TSPAN12O95859 305 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 COL9A1P20849 921 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 FCARP24071 287 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PSMB5P28074 263 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ERVPABLB-1P60509 514 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 RPL38P63173 70 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 KLF10Q13118 480 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 SGCGQ13326 291 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TIGD2Q4W5G0 525 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ANGPTL8Q6UXH0 198 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 CYS1Q717R9 158 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ZNF740Q8NDX6 193 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PNPT1Q8TCS8 783 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 HHIPQ96QV1 700 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ATOH8Q96SQ7 321 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TXLNGQ9NUQ3 528 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 KCNK4Q9NYG8 393 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ZNF225Q9UK10 706 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 FBXO10Q9UK96 956 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 SLCO1B1Q9Y6L6 691 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 AZIN1O14977 448 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ABCB1P08183 1280 aaPredicted RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 OR56A5P0C7T3 313 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 MAP4P27816 1152 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 PRKAA2P54646 552 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 EPHA5P54756 1037 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 RAB30Q15771 203 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 MPP7Q5T2T1 576 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 DGLUCYQ7Z3D6 616 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 RALGPS2Q86X27 583 aaPredicted RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 PATE1Q8WXA2 126 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TADA1Q96BN2 335 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 EGLN2Q96KS0 407 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TBCDQ9BTW9 1192 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TUBB1Q9H4B7 451 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 GNPTGQ9UJJ9 305 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 COL4A3Q01955 1670 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 A0A1W2PQU0 124 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 KANSL1LA0AUZ9 987 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TARM1B6A8C7 271 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 GFRA2O00451 464 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 RAD51BO15315 384 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 SLC16A8O95907 504 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 VARSP26640 1264 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 PIK3R1P27986 724 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 COPAP53621 1224 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 FASTKQ14296 549 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 ABRAXAS2Q15018 415 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 TMEM196Q5HYL7 178 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 AARS2Q5JTZ9 985 aaKnown RBP10.33□□□□□ -0.76
VPS11-208ENST00000621676 SZRD1Q7Z422 152 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PARP9Q8IXQ6 854 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 SKA1Q96BD8 255 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PPP1R2P1Q96PQ5 205 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 ATXN10Q9UBB4 475 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 OPTCQ9UBM4 332 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 SUN2Q9UH99 717 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 CYP8B1Q9UNU6 501 aa10.33□□□□□ -0.76
VPS11-208ENST00000621676 PTPRSQ13332 1948 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 GSC2O15499 205 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 SEC22BO75396 215 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 ESR1P03372 595 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 ACADMP11310 421 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 NSG1P42857 185 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 HERVK_113P63132 956 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 ELAVL3Q14576 367 aaKnown RBP10.32□□□□□ -0.76
VPS11-208ENST00000621676 CST6Q15828 149 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 CTC1Q2NKJ3 1217 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 GAB4Q2WGN9 574 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 RGS9BPQ6ZS82 235 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 VOPP1Q96AW1 172 aa10.32□□□□□ -0.76
VPS11-208ENST00000621676 C19orf60Q96EN9 201 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms