RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 RPA4Q13156 261 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 SYTL3Q4VX76 610 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 ZNF449Q6P9G9 518 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 TRMT10BQ6PF06 316 aaKnown RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 ZBED8Q8IZ13 594 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 OR10G6Q8NH81 332 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 CALML6Q8TD86 181 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 GATA6Q92908 595 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 FAM136AQ96C01 138 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 CERS2Q96G23 380 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 ATXN7L3BQ96GX2 97 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 FAM167BQ9BTA0 163 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 TMEM121BQ9BXQ6 578 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 UCK1Q9HA47 277 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 EPB41L5Q9HCM4 733 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 SAYSD1Q9NPB0 183 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 INTS10Q9NVR2 710 aaKnown RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 TMEM9Q9P0T7 183 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 SLC17A6Q9P2U8 582 aa13.79□□□□□ -0.2
PTCH1-226ENST00000553011 DMGDHQ9UI17 866 aaKnown RBP13.79□□□□□ -0.2
PTCH1-226ENST00000553011 TRABD2BA6NFA1 517 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 BHMG1C9JSJ3 638 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-226ENST00000553011 AGRPO00253 132 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 HOXB3P14651 431 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-226ENST00000553011 TYRP1P17643 537 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 AOAHP28039 575 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 EPHA4P54764 986 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 INHBCP55103 352 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 GPLD1P80108 840 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 CAV1Q03135 178 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 HSPA14Q0VDF9 509 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 CBLBQ13191 982 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 ZNF574Q6ZN55 896 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-226ENST00000553011 CAPN12Q6ZSI9 719 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 PDZD3Q86UT5 571 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 PIM3Q86V86 326 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 VRK3Q8IV63 474 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 SLITRK4Q8IW52 837 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 LMNTD2Q8IXW0 634 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 CEP112Q8N8E3 955 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 PHC3Q8NDX5 983 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 SEC14L1Q92503 715 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 TMEM159Q96B96 161 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 AHCYL2Q96HN2 611 aaKnown RBP13.78□□□□□ -0.2
PTCH1-226ENST00000553011 PANX3Q96QZ0 392 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 TSSK1BQ9BXA7 367 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 ZMYND15Q9H091 742 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 SEMA6CQ9H3T2 930 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 OGFRQ9NZT2 677 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 CDYLQ9Y232 598 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 URB1O60287 2271 aaKnown RBP13.78□□□□□ -0.2
PTCH1-226ENST00000553011 EPG5Q9HCE0 2579 aa13.78□□□□□ -0.2
PTCH1-226ENST00000553011 A0A1W2PNU3 283 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PMS2P1A4D2B8 440 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 IFRD1O00458 451 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 EIF3HO15372 352 aaKnown RBP eCLIP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 DUX1O43812 170 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 GPC4O75487 556 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 HAUS5O94927 633 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ESR1P03372 595 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PROS1P07225 676 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PKMP14618 531 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 MPSTP25325 297 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ACADLP28330 430 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ABCG1P45844 678 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 CD151P48509 253 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 CARSP49589 748 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ADARP55265 1226 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ZFP36L1Q07352 338 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 SQSTM1Q13501 440 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PHF19Q5T6S3 580 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 ZNF549Q6P9A3 640 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 CNSTQ6PJW8 725 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 CCDC25Q86WR0 208 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 SPNS2Q8IVW8 549 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 RBM12BQ8IXT5 1001 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 C2CD4AQ8NCU7 369 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 LRRN4CLQ8ND94 238 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PYROXD1Q8WU10 500 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 NCSTNQ92542 709 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 RSC1A1Q92681 617 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 TFGQ92734 400 aaPredicted RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 FERD3LQ96RJ6 166 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PPANQ9NQ55 473 aaKnown RBP13.77□□□□□ -0.21
PTCH1-226ENST00000553011 GALPQ9UBC7 116 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 VPS9D1Q9Y2B5 631 aa13.77□□□□□ -0.21
PTCH1-226ENST00000553011 PCM1Q15154 2024 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 USP24Q9UPU5 2620 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 IGHV5-10-1A0A0J9YXX1 117 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 C1QTNF9BB2RNN3 333 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 H3BMM5 538 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 UBXN7O94888 489 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 APOA4P06727 396 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 C1QTNF9P0C862 333 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 AMD1P17707 334 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 CHRM3P20309 590 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 GABRB3P28472 473 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 CCKBRP32239 447 aa13.76□□□□□ -0.21
PTCH1-226ENST00000553011 LIMK2P53671 638 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms