RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 U3KQA8 63 aa13.47□□□□□ -0.25
PTCH1-213ENST00000546820 BPTFQ12830 3046 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 A0A087WUV0 522 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 OR52A4PA6NMU1 304 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 PPM1DO15297 605 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 KDM1AO60341 852 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 GPC4O75487 556 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ACSL3O95573 720 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FAM153BP0C7A2 387 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 MTHFD1P11586 935 aaKnown RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CD9P21926 228 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 GABRB3P28472 473 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 PDHA2P29803 388 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 SPRP35270 261 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 GP5P40197 560 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 PREPP48147 710 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ACADVLP49748 655 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 SLC12A2P55011 1212 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CSE1LP55060 971 aaKnown RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ERCC6LQ2NKX8 1250 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FAM153CQ494X1 144 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 PPM1JQ5JR12 505 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FAM45BPQ6NSW5 357 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 TTC23LQ6PF05 361 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 PDZD3Q86UT5 571 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ZC3HC1Q86WB0 502 aaKnown RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 SFTPA2Q8IWL1 248 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ZBTB2Q8N680 514 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 LILRA3Q8N6C8 439 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 GPATCH11Q8N954 259 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FAM45AQ8TCE6 357 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 SKA2Q8WVK7 121 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CCDC74AQ96AQ1 378 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 VPS39Q96JC1 886 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FOPNLQ96NB1 174 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 FERD3LQ96RJ6 166 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 INSM2Q96T92 566 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CCDC3Q9BQI4 270 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 CCDC77Q9BR77 488 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 RHOJQ9H4E5 214 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 UCK1Q9HA47 277 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 SLC40A1Q9NP59 571 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 ZNF624Q9P2J8 865 aaPredicted RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 RABGEF1Q9UJ41 708 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 TRMT6Q9UJA5 497 aaKnown RBP13.46□□□□□ -0.25
PTCH1-213ENST00000546820 IKBKGQ9Y6K9 419 aa13.46□□□□□ -0.25
PTCH1-213ENST00000546820 GOLGA4Q13439 2230 aaKnown RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 CXorf49A8MYA2 514 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 RPN2P04844 631 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 FTH1P19P0C7X4 201 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 CBSLP0DN79 551 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ALDH4A1P30038 563 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ATP5DP30049 168 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 CBSP35520 551 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 MAPK9P45984 424 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 PPM1FP49593 454 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 RGS4P49798 205 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 CLCN7P51798 805 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 UBE2IP63279 158 aaKnown RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 KLHL38Q2WGJ6 581 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 HECTD2Q5U5R9 776 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 NAPRTQ6XQN6 538 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 TMEM26Q6ZUK4 368 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 DGLUCYQ7Z3D6 616 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ZNF438Q7Z4V0 828 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 SLCO6A1Q86UG4 719 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 SLC22A15Q8IZD6 547 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 Q8N9G6 341 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 LKAAEAR1Q8TD35 194 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 FAM136AQ96C01 138 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 AHCYL2Q96HN2 611 aaKnown RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ELMO2Q96JJ3 720 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 RMDN2Q96LZ7 410 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 NDNQ99608 321 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 FUT8Q9BYC5 575 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ACSS3Q9H6R3 686 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 MVB12BQ9H7P6 319 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 SMYD2Q9NRG4 433 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 KCNK4Q9NYG8 393 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 SLC17A6Q9P2U8 582 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 POLG2Q9UHN1 485 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 ASF1AQ9Y294 204 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 PSAT1Q9Y617 370 aa13.45□□□□□ -0.26
PTCH1-213ENST00000546820 V9GYY5 206 aaPredicted RBP13.45□□□□□ -0.26
PTCH1-213ENST00000546820 EIF3FO00303 357 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-213ENST00000546820 OPA1O60313 960 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 F7P08709 466 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-213ENST00000546820 ABHD2P08910 425 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 ENO3P13929 434 aaPredicted RBP13.44□□□□□ -0.26
PTCH1-213ENST00000546820 SAT1P21673 171 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 ACADLP28330 430 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 EPHA4P54764 986 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 VSNL1P62760 191 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 GPLD1P80108 840 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 POU4F1Q01851 419 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 ABRQ12979 859 aa13.44□□□□□ -0.26
PTCH1-213ENST00000546820 PDAP1Q13442 181 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms