RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PRAMEF12O95522 483 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ESR1P03372 595 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CDH1P12830 882 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DGKQP52824 942 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MTPNP58546 118 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 KIAA0040Q15053 153 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 C9orf50Q5SZB4 431 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FUT10Q6P4F1 479 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 OR4F6Q8NGB9 312 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PDLIM5Q96HC4 596 aaKnown RBP15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DOK1Q99704 481 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DHRS7Q9Y394 339 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PCDHGA11Q9Y5H2 935 aa15.83■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DYTNA2CJ06 578 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 E5RI56 91 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PFDN6O15212 129 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NUP107P57740 925 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RAB39AQ14964 217 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PLCL1Q15111 1095 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CRY1Q16526 586 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CXorf57Q6NSI4 855 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NCEH1Q6PIU2 408 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SBSNQ6UWP8 590 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 LINGO4Q6UY18 593 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PRR23BQ6ZRT6 265 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TAS2R42Q7RTR8 314 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SPRED2Q7Z698 418 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 WBP2Q969T9 261 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CASD1Q96PB1 797 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CGREF1Q99674 301 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ADGRE3Q9BY15 652 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GKN1Q9NS71 199 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 MAGEL2Q9UJ55 1249 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CCL27Q9Y4X3 112 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 COMMD10Q9Y6G5 202 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NT5C1B-RDH14C9J2C7 533 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ADAM12O43184 909 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 COCHO43405 550 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TSPAN3O60637 253 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CXCL10P02778 98 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CNPP09543 421 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 YAP1P46937 504 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF177Q13360 481 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ABRAXAS2Q15018 415 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RFTN2Q52LD8 501 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 RNF219Q5W0B1 726 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FAM109BQ6ICB4 259 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMEM214Q6NUQ4 689 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMEM173Q86WV6 379 aaPredicted RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PDPRQ8NCN5 879 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 BDH2Q9BUT1 245 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 YTHDF1Q9BYJ9 559 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 OSBPL6Q9BZF3 934 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 IL17CQ9P0M4 197 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TSR3Q9UJK0 312 aaKnown RBP15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TMED5Q9Y3A6 229 aa15.82■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 hCG_2014768A0A024R1R8 64 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GRXCR1A8MXD5 290 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 H0YAE9 185 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 STC2O76061 302 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ALDH2P05091 517 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TCF3P15923 654 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GGT1P19440 569 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 DCKP27707 260 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CA5AP35218 305 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FPGSQ05932 587 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 SMARCB1Q12824 385 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TRAF3Q13114 568 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PWP1Q13610 501 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GTF2H2Q13888 395 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 GTF2H2CQ6P1K8 395 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 KLHL35Q6PF15 583 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 PRSS55Q6UWB4 352 aaPredicted RBP15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 KCTD8Q6ZWB6 473 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CHST9Q7L1S5 443 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF583Q96ND8 569 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CDK5RAP1Q96SZ6 601 aaKnown RBP15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 POLR1BQ9H9Y6 1135 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CARS2Q9HA77 564 aaKnown RBP15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 LHX3Q9UBR4 397 aa15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 POLR3HQ9Y535 204 aaPredicted RBP15.81■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ZNF840PA6NDX5 716 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TRIM64BA6NI03 449 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 H3BMQ9 156 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 TAPBPO15533 448 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 FZD6O60353 706 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HNRNPCP07910 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CORO1AP31146 461 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 POLR2IP36954 125 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CD97P48960 835 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ENTPD1P49961 510 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 HLCSP50747 726 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 NR6A1Q15406 480 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 AP5B1Q2VPB7 878 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 AARS2Q5JTZ9 985 aaKnown RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 OTUD3Q5T2D3 398 aaPredicted RBP15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CCNYL2Q5T2Q4 361 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 ELMSAN1Q6PJG2 1045 aa15.8■□□□□ 0.12
MSH5-SAPCD1-208ENST00000498473 CHST15Q7LFX5 561 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms