RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 GSTM4Q03013 218 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 RPA4Q13156 261 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 BOP1Q14137 746 aaKnown RBP18.47■□□□□ 0.55
PTCD3-210ENST00000473829 PLCL1Q15111 1095 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 ANKRD20A4Q4UJ75 823 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 ARMC3Q5W041 872 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 TMEM135Q86UB9 458 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 PDZD3Q86UT5 571 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 KRT222Q8N1A0 295 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 OTUD6BQ8N6M0 293 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 NAF1Q96HR8 494 aaKnown RBP18.47■□□□□ 0.55
PTCD3-210ENST00000473829 TGM7Q96PF1 710 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 KIR3DX1Q9H7L2 352 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 FOXJ2Q9P0K8 574 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 RNF14Q9UBS8 474 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 SLC24A2Q9UI40 661 aa18.47■□□□□ 0.55
PTCD3-210ENST00000473829 C9orf172C9J069 976 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 BHMG1C9JSJ3 638 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PRMT5O14744 637 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 LIN7AO14910 233 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 CAPN5O15484 640 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 KIF1CO43896 1103 aaKnown RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PRAMEF10O60809 474 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 MRPS25P82663 173 aaKnown RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 DHX34Q14147 1143 aaKnown RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 TYSND1Q2T9J0 566 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 MSS51Q4VC12 460 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 SYDE1Q6ZW31 735 aaPredicted RBP18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PLXDC1Q8IUK5 500 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 BMPERQ8N8U9 685 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 AGBL5Q8NDL9 886 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PHC3Q8NDX5 983 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 USP7Q93009 1102 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 C9orf72Q96LT7 481 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PWWP2AQ96N64 755 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 RUNDC3BQ96NL0 473 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 KRT12Q99456 494 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 CDYLQ9Y232 598 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 PCDHGA7Q9Y5G6 932 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 MAD1L1Q9Y6D9 718 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 RPS6KL1Q9Y6S9 549 aa18.46■□□□□ 0.55
PTCD3-210ENST00000473829 ITPR1Q14643 2758 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 ACADLP28330 430 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 CSTF2P33240 577 aaKnown RBP eCLIP18.45■□□□□ 0.54
PTCD3-210ENST00000473829 PPARGP37231 505 aaPredicted RBP18.45■□□□□ 0.54
PTCD3-210ENST00000473829 CD151P48509 253 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 CSE1LP55060 971 aaKnown RBP18.45■□□□□ 0.54
PTCD3-210ENST00000473829 SYTL3Q4VX76 610 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 CTSL3PQ5NE16 218 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 MRNIPQ6NTE8 343 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 C19orf48Q6RUI8 117 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 CENPUQ71F23 418 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 HOOK3Q86VS8 718 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 VRK3Q8IV63 474 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 ZNF248Q8NDW4 579 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 HNRNPLLQ8WVV9 542 aaKnown RBP18.45■□□□□ 0.54
PTCD3-210ENST00000473829 LPGAT1Q92604 370 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 FERD3LQ96RJ6 166 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 AKAP7Q9P0M2 348 aaPredicted RBP18.45■□□□□ 0.54
PTCD3-210ENST00000473829 HEBP2Q9Y5Z4 205 aa18.45■□□□□ 0.54
PTCD3-210ENST00000473829 SDK2Q58EX2 2172 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 UBA6A0AVT1 1052 aaPredicted RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 MAGEB16A2A368 324 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 EFCAB7A8K855 629 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 IFRD1O00458 451 aaPredicted RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 TP73O15350 636 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 NDUFS3O75489 264 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 USP1O94782 785 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 ANKRD34CP0C6C1 535 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 PAMP19021 973 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 RPS3P23396 243 aaKnown RBP eCLIP18.44■□□□□ 0.541e-6■■□□□ 12.1
PTCD3-210ENST00000473829 EIF3BP55884 814 aaKnown RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 DHX9Q08211 1270 aaKnown RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 C2orf54Q08AI8 447 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 ZNF789Q5FWF6 425 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 HIBCHQ6NVY1 386 aaPredicted RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 NEPROQ6NW34 567 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 IRGCQ6NXR0 463 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 FAM92BQ6ZTR7 304 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 PCGF5Q86SE9 256 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 FAM129CQ86XR2 697 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 CILP2Q8IUL8 1156 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 SPACA3Q8IXA5 215 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 UNC5BQ8IZJ1 945 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 ACVR1CQ8NER5 493 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 SPATA4Q8NEY3 305 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 OR5AR1Q8NGP9 310 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 TFGQ92734 400 aaPredicted RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 ART4Q93070 314 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 STAMBPL1Q96FJ0 436 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 CRELD1Q96HD1 420 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 BIRC8Q96P09 236 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 WDR83Q9BRX9 315 aaKnown RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 HGH1Q9BTY7 390 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 CARD6Q9BX69 1037 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 TRIM31Q9BZY9 425 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 RAB33BQ9H082 229 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.44■□□□□ 0.54
PTCD3-210ENST00000473829 EPHA6Q9UF33 1036 aa18.44■□□□□ 0.54
PTCD3-210ENST00000473829 GNPTGQ9UJJ9 305 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms